SMTL ID : 5ddu.1 (1 other biounit)

Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with PMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

homo-dimer

Ligands

2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.1: 14 residues within 4Å: Chain A: S.119, G.120, A.121, N.124, F.207, H.208, G.209, E.282, D.315, V.317, Q.318, K.344 Chain B: S.373, T.374 11 PLIP interactions: 4 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:T.374, B:T.374, B:T.374, A:S.119, A:G.120, A:A.121, A:Q.318, A:K.344 Water bridges: B:F.375, A:F.207 Hydrophobic interactions: A:V.317 PMP.5: 14 residues within 4Å: Chain A: S.373, T.374 Chain B: S.119, G.120, A.121, N.124, F.207, H.208, G.209, E.282, D.315, V.317, Q.318, K.344 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.317 Hydrogen bonds: B:S.119, B:G.120, B:A.121, B:N.124, B:Q.318, B:K.344, A:T.374, A:T.374 Water bridges: B:F.207, B:E.282, A:F.375

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: R.197, T.228, A.229, L.230, S.231, S.232 Chain B: R.197, A.229, L.230, S.231, S.232 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.229, A:S.231, B:S.231 GOL.3: 3 residues within 4Å: Chain A: W.18, F.458 Chain B: V.369 No protein-ligand interaction detected (PLIP) GOL.6: 2 residues within 4Å: Chain B: E.296, E.299 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.296 GOL.7: 3 residues within 4Å: Chain B: H.64, P.65, Y.492 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.492 GOL.8: 4 residues within 4Å: Chain B: E.66, H.70, A.73, K.387 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.70, B:K.387

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 6 residues within 4Å: Chain A: V.26, E.27, V.29, Y.38, L.39 Chain B: R.87 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.87, A:E.27, A:E.27, A:E.27, A:L.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, Y. et al., Biochemical and Structural Insights into the Aminotransferase CrmG in Caerulomycin Biosynthesis. Acs Chem.Biol. (2016)

Release Date

2016-08-10

Peptides

CrmG: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CrmG

Related Entries With Identical Sequence