SMTL ID : 5deo.1 (1 other biounit)

Mycobacterium abscessus NadD in complex with nicotinic acid adenine dinucleotide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-dimer

Ligands

2 x DND: NICOTINIC ACID ADENINE DINUCLEOTIDE(Non-covalent)

DND.1: 24 residues within 4Å: Chain A: M.16, G.17, G.18, T.19, F.20, H.24, G.26, H.27, T.48, T.92, Y.93, T.94, F.112, T.114, G.115, D.117, A.118, W.125, E.126, V.140, S.141, R.142, L.170, I.172 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:G.17, A:T.19, A:T.19, A:F.20, A:T.94, A:T.94, A:T.114, A:G.115, A:D.117, A:A.118, A:E.126, A:R.142, A:I.172 Water bridges: A:G.18, A:D.85, A:T.92, A:V.95, A:I.113, A:D.117, A:R.142, A:R.142, A:L.170, A:I.172 Salt bridges: A:H.27 pi-Stacking: A:W.125, A:W.125 DND.2: 24 residues within 4Å: Chain B: M.16, G.17, G.18, T.19, F.20, H.24, G.26, H.27, T.48, T.92, Y.93, T.94, F.112, T.114, G.115, D.117, A.118, W.125, E.126, V.140, S.141, R.142, L.170, I.172 25 PLIP interactions: 25 interactions with chain B Hydrogen bonds: B:G.17, B:T.19, B:T.19, B:F.20, B:T.94, B:T.94, B:T.114, B:G.115, B:D.117, B:A.118, B:E.126, B:I.172 Water bridges: B:G.18, B:G.18, B:I.113, B:T.114, B:R.142, B:R.142, B:L.170, B:I.172, B:S.174, B:S.174 Salt bridges: B:H.27 pi-Stacking: B:W.125, B:W.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reed, R.W. et al., Mycobacterium abscessus NadD in complex with nicotinic acid adenine dinucleotide. to be published

Release Date

2016-08-24

Peptides

Nicotinate-nucleotide adenylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinate-nucleotide adenylyltransferase

Related Entries With Identical Sequence