- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.13 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x MG: MAGNESIUM ION(Non-covalent)
- 12 x CA: CALCIUM ION(Non-covalent)
CA.4: 6 residues within 4Å:- Chain A: D.427, G.428, N.454, T.456, G.458
- Ligands: TPP.7
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.427, A:T.456, H2O.2
CA.5: 1 residues within 4Å:- Chain A: D.363
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.363, H2O.1, H2O.4, H2O.20, H2O.21
CA.6: 2 residues within 4Å:- Chain A: A.415, P.417
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:A.415, H2O.12, H2O.13, H2O.16, H2O.18
CA.11: 6 residues within 4Å:- Chain B: D.427, G.428, N.454, T.456, G.458
- Ligands: TPP.14
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.427, B:T.456, H2O.23
CA.12: 1 residues within 4Å:- Chain B: D.363
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.363, H2O.22, H2O.25, H2O.41, H2O.42
CA.13: 2 residues within 4Å:- Chain B: A.415, P.417
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:A.415, H2O.34, H2O.34, H2O.38, H2O.39
CA.18: 6 residues within 4Å:- Chain C: D.427, G.428, N.454, T.456, G.458
- Ligands: TPP.21
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.427, C:T.456, H2O.44
CA.19: 1 residues within 4Å:- Chain C: D.363
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:D.363, H2O.43, H2O.46, H2O.62, H2O.63
CA.20: 2 residues within 4Å:- Chain C: A.415, P.417
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:A.415, H2O.55, H2O.55, H2O.59, H2O.60
CA.25: 6 residues within 4Å:- Chain D: D.427, G.428, N.454, T.456, G.458
- Ligands: TPP.28
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.427, D:T.456, H2O.65
CA.26: 1 residues within 4Å:- Chain D: D.363
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:D.363, H2O.64, H2O.68, H2O.83, H2O.84
CA.27: 2 residues within 4Å:- Chain D: A.415, P.417
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:A.415, H2O.76, H2O.76, H2O.80, H2O.81
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.7: 30 residues within 4Å:- Chain A: E.374, S.375, T.376, S.377, T.378, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, V.459, L.460
- Chain B: N.22, P.23, G.24, S.25, E.46, H.69, A.72, G.73, N.76, L.109
- Ligands: CA.4
20 PLIP interactions:18 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:L.402, A:Y.432, A:L.460
- Hydrogen bonds: A:T.376, A:T.376, A:T.376, A:S.377, A:L.402, A:G.426, A:G.428, A:S.429, A:Y.432, A:N.454, A:T.456, A:G.458, A:V.459, B:H.69
- Water bridges: A:D.427, A:N.454, B:H.69
TPP.14: 30 residues within 4Å:- Chain A: N.22, P.23, G.24, S.25, E.46, H.69, A.72, G.73, N.76, L.109
- Chain B: E.374, S.375, T.376, S.377, T.378, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, V.459, L.460
- Ligands: CA.11
20 PLIP interactions:18 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.402, B:Y.432, B:L.460
- Hydrogen bonds: B:T.376, B:T.376, B:T.376, B:S.377, B:L.402, B:G.426, B:G.428, B:S.429, B:Y.432, B:N.454, B:T.456, B:G.458, B:V.459, A:H.69
- Water bridges: B:D.427, B:N.454, A:H.69
TPP.21: 30 residues within 4Å:- Chain C: E.374, S.375, T.376, S.377, T.378, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, V.459, L.460
- Chain D: N.22, P.23, G.24, S.25, E.46, H.69, A.72, G.73, N.76, L.109
- Ligands: CA.18
20 PLIP interactions:18 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:L.402, C:Y.432, C:L.460
- Hydrogen bonds: C:T.376, C:T.376, C:T.376, C:S.377, C:L.402, C:G.426, C:G.428, C:S.429, C:Y.432, C:N.454, C:T.456, C:G.458, C:V.459, D:H.69
- Water bridges: C:D.427, C:N.454, D:H.69
TPP.28: 30 residues within 4Å:- Chain C: N.22, P.23, G.24, S.25, E.46, H.69, A.72, G.73, N.76, L.109
- Chain D: E.374, S.375, T.376, S.377, T.378, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, V.459, L.460
- Ligands: CA.25
20 PLIP interactions:18 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:L.402, D:Y.432, D:L.460
- Hydrogen bonds: D:T.376, D:T.376, D:T.376, D:S.377, D:L.402, D:G.426, D:G.428, D:S.429, D:Y.432, D:N.454, D:T.456, D:G.458, D:V.459, C:H.69
- Water bridges: D:D.427, D:N.454, C:H.69
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bera, A.K. et al., Benzoylformate decarboxylase F464I and A460V mutant from Pseudomonas putida. to be published
- Release Date
- 2015-09-16
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.13 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x MG: MAGNESIUM ION(Non-covalent)
- 12 x CA: CALCIUM ION(Non-covalent)
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bera, A.K. et al., Benzoylformate decarboxylase F464I and A460V mutant from Pseudomonas putida. to be published
- Release Date
- 2015-09-16
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A