SMTL ID : 5dgj.1

1.0A resolution structure of Norovirus 3CL protease in complex an oxadiazole-based, cell permeable macrocyclic (20-mer) inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

1 x V64: tert-butyl [(4S,7S,10S)-7-(cyclohexylmethyl)-10-(hydroxymethyl)-5,8,13-trioxo-22-oxa-6,9,14,20,21-pentaazabicyclo[17.2.1]docosa-1(21),19-dien-4-yl]carbamate(Covalent)

V64.1: 16 residues within 4Å: Chain A: H.37, E.61, I.116, Q.117, R.119, V.121, G.144, D.145, C.146, H.164, A.165, A.166, A.167, T.168, T.173, V.175 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:E.61, A:I.116, A:I.116, A:R.119, A:V.121, A:A.166, A:T.173, A:V.175 Hydrogen bonds: A:Q.117, A:A.165, A:A.167, A:A.167 Water bridges: A:Q.117 pi-Stacking: A:H.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Damalanka, V.C. et al., Oxadiazole-Based Cell Permeable Macrocyclic Transition State Inhibitors of Norovirus 3CL Protease. J.Med.Chem. (2016)

Release Date

2016-02-10

Peptides

3C-LIKE PROTEASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3C-LIKE PROTEASE

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