SMTL ID : 5dgs.1

Crystal structure of human FPPS in complex with the monophosphonate compound 15

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

homo-dimer

Ligands

2 x 5A7: {(E)-2-[6-(acetylamino)-8-(naphthalen-1-yl)quinolin-2-yl]ethenyl}phosphonic acid(Non-covalent)

5A7.1: 17 residues within 4Å: Chain A: Y.7, G.53, K.54, Y.55, N.56, R.57, T.60, Q.93, R.110, S.202, F.203, F.236, Q.239, L.341, K.344, I.345, K.347 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.7, A:N.56, A:R.57, A:F.203, A:L.341, A:K.344, A:I.345 Hydrogen bonds: A:K.54, A:Y.55, A:N.56, A:N.56, A:R.57, A:Q.93, A:R.110, A:Q.239, A:K.344 Water bridges: A:R.57, A:E.90, A:R.110, A:R.110 pi-Stacking: A:F.236, A:F.236, A:F.236 pi-Cation interactions: A:K.54 5A7.2: 17 residues within 4Å: Chain B: Y.7, G.53, K.54, Y.55, N.56, R.57, T.60, Q.93, R.110, S.202, F.203, F.236, Q.239, L.341, K.344, I.345, K.347 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:Y.7, B:N.56, B:R.57, B:F.203, B:L.341, B:K.344, B:I.345 Hydrogen bonds: B:K.54, B:Y.55, B:N.56, B:N.56, B:R.57, B:Q.93, B:R.110, B:Q.239, B:K.344 Water bridges: B:R.57, B:E.90, B:R.110, B:R.110 pi-Stacking: B:F.236, B:F.236, B:F.236 pi-Cation interactions: B:K.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jahnke, W. et al., A General Strategy for Targeting Drugs to Bone. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2016-07-13

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

Farnesyl pyrophosphate synthase

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