SMTL ID : 5din.1

Structural Basis for the Indispensable Role of a Unique Zinc Finger Motif in LNX2 Ubiquitination

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: N.18, C.33, C.36, C.53, C.56 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.33, A:C.36, A:C.53, A:C.56 ZN.2: 4 residues within 4Å: Chain A: C.48, H.50, C.67, D.70 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.48, A:H.50, A:C.67, A:D.70, A:D.70 ZN.3: 4 residues within 4Å: Chain A: C.6, C.9, H.13, H.19 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.6, A:C.9, A:H.13, A:H.19 ZN.4: 4 residues within 4Å: Chain A: C.97, C.103, H.115, C.120 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.103, A:H.115, A:C.120 ZN.5: 4 residues within 4Å: Chain B: C.97, C.103, H.115, C.120 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.103, B:H.115, B:C.120 ZN.6: 4 residues within 4Å: Chain B: C.6, C.9, H.13, H.19 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.6, B:C.9, B:H.13, B:H.19 ZN.7: 5 residues within 4Å: Chain B: N.18, C.33, C.36, C.53, C.56 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.33, B:C.36, B:C.53, B:C.56 ZN.8: 4 residues within 4Å: Chain B: C.48, H.50, C.67, D.70 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.48, B:H.50, B:C.67, B:D.70, B:D.70

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.9: 5 residues within 4Å: Chain B: R.16, E.17, N.18, K.55, N.59 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nayak, D. et al., Structural basis for the indispensable role of a unique zinc finger motif in LNX2 ubiquitination. Oncotarget (2015)

Release Date

2015-10-14

Peptides

Ligand of Numb protein X 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ligand of Numb protein X 2