SMTL ID : 5djt.1

Crystal structure of LOV2 (C450A) domain in complex with Zdk2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: Q.78, H.118, V.119, E.124 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.118

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 22 residues within 4Å: Chain A: V.15, T.17, N.24, N.48, A.49, R.50, L.52, Q.53, V.62, I.65, R.66, I.69, L.79, N.81, N.91, F.93, L.95, F.108, I.109, G.110, Q.112 Ligands: CL.3 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.15, A:T.17, A:I.69, A:F.93, A:L.95 Hydrogen bonds: A:N.48, A:A.49, A:Q.53, A:N.81, A:N.81, A:N.91, A:Q.112 Water bridges: A:R.50, A:R.59, A:R.66, A:R.66 Salt bridges: A:R.50, A:R.66

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: N.24, N.48, I.69 Ligands: FMN.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., LOVTRAP: an optogenetic system for photoinduced protein dissociation. Nat.Methods (2016)

Release Date

2016-07-20

Peptides

NPH1-2: A
Engineered protein, Zdk2 affibody: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NPH1-2

Engineered protein, Zdk2 affibody

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