- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 5 residues within 4Å:- Chain A: K.219, T.223, Y.266, G.267, K.270
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.223, A:T.223, A:K.270
GOL.7: 5 residues within 4Å:- Chain B: K.219, T.223, Y.266, G.267, K.270
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.223, B:T.223, B:K.270
- 2 x 5BX: (5S)-5-[(1R)-1-(1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4(5H)-one(Non-covalent)
5BX.4: 18 residues within 4Å:- Chain A: F.6, S.7, G.8, I.9, Q.10, V.41, H.44, T.47, Y.126, M.130, D.133, I.134, V.142, V.144, Q.148, H.151
- Ligands: ATP.1, MG.2
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:F.6, A:F.6, A:Q.10, A:D.133, A:I.134, A:V.142, A:V.144
- Hydrogen bonds: A:H.44, A:H.44, A:D.133
- Water bridges: A:Q.10, A:Q.10, A:Q.148, A:Q.148
5BX.8: 18 residues within 4Å:- Chain B: F.6, S.7, G.8, I.9, Q.10, V.41, H.44, T.47, Y.126, M.130, D.133, I.134, V.142, V.144, Q.148, H.151
- Ligands: ATP.5, MG.6
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:F.6, B:F.6, B:Q.10, B:D.133, B:I.134, B:V.142, B:V.144
- Hydrogen bonds: B:H.44, B:H.44, B:D.133, B:D.133
- Water bridges: B:Q.10, B:Q.10, B:Q.148, B:Q.148
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Williams, T.L. et al., Selective Inhibition of Bacterial Tryptophanyl-tRNA Synthetases by Indolmycin Is Mechanism-based. J.Biol.Chem. (2016)
- Release Date
- 2015-11-18
- Peptides
- Tryptophan--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x 5BX: (5S)-5-[(1R)-1-(1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4(5H)-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Williams, T.L. et al., Selective Inhibition of Bacterial Tryptophanyl-tRNA Synthetases by Indolmycin Is Mechanism-based. J.Biol.Chem. (2016)
- Release Date
- 2015-11-18
- Peptides
- Tryptophan--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A