SMTL ID : 5dn1.1

Crystal structure of Phosphoribosyl isomerase A from Streptomyces coelicolor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: R.19, D.171, G.172, G.197, G.198, V.221, G.222, K.223 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.172, A:G.198, A:G.222, A:K.223 Water bridges: A:G.197, A:G.197, A:V.199, A:A.224 Salt bridges: A:R.19 SO4.2: 3 residues within 4Å: Chain A: Y.149, E.150, D.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.153, A:D.153 Water bridges: A:E.150

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 10 residues within 4Å: Chain A: V.165, T.166, D.167, K.170, P.177, N.178, L.181, L.182, S.196, G.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.167, A:D.167, A:N.178

1 x AMZ: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE(Non-covalent)

AMZ.4: 17 residues within 4Å: Chain A: L.20, G.23, V.52, L.54, A.57, F.58, S.81, G.82, G.83, I.84, R.85, L.103, G.104, T.105, D.130, G.140, W.141 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:D.11, A:S.81, A:G.83, A:I.84, A:G.104, A:T.105, A:T.105, A:G.140 Water bridges: A:S.25, A:G.82, A:G.82, A:G.140, A:G.140 Salt bridges: A:R.85 pi-Stacking: A:W.141, A:W.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verduzco-Castro, E.A. et al., Co-occurrence of analogous enzymes determines evolution of a novel ( beta alpha )8-isomerase sub-family after non-conserved mutations in flexible loop. Biochem. J. (2016)

Release Date

2015-09-30

Peptides

Phosphoribosyl isomerase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoribosyl isomerase A