SMTL ID : 5dp5.1

Crystal Structure of EV71 3C Proteinase in complex with compound 4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x 5E9: ethyl (2Z,4S)-4-{[(2R,5S)-5-amino-2-(4-fluorobenzyl)-6-methyl-4-oxoheptanoyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate(Covalent)

5E9.1: 17 residues within 4Å: Chain A: Q.23, F.26, R.40, H.41, E.72, L.128, S.129, K.131, T.143, K.144, A.145, G.146, C.148, H.162, I.163, G.164, G.165 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.26, A:H.41, A:L.128 Hydrogen bonds: A:T.143, A:G.146, A:I.163, A:G.165 Water bridges: A:C.148, A:N.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, C. et al., Fragment-wise design of inhibitors to 3C proteinase from enterovirus 71. Biochim.Biophys.Acta (2016)

Release Date

2016-03-30

Peptides

3C proteinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3C proteinase

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