SMTL ID : 5dp9.1

Crystal Structure of EV71 3C Proteinase in complex with compound 9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 5EX: ethyl (2Z,4S)-4-[(N-{[(cyclobutylmethyl)amino](oxo)acetyl}-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate(Covalent)

5EX.1: 18 residues within 4Å: Chain A: R.40, H.41, E.72, L.126, N.127, L.128, S.129, K.131, T.143, K.144, A.145, G.146, C.148, H.162, I.163, G.164, G.165, N.166 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:H.41, A:L.126, A:L.128, A:K.131, A:N.166 Hydrogen bonds: A:S.129, A:S.129, A:T.143, A:G.146, A:I.163, A:G.165 Water bridges: A:C.148, A:N.166, A:N.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, C. et al., Fragment-wise design of inhibitors to 3C proteinase from enterovirus 71. Biochim.Biophys.Acta (2016)

Release Date

2016-03-30

Peptides

3C proteinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3C proteinase

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