SMTL ID : 5dva.1 (3 other biounits)

Fragments bound to the OXA-48 beta-lactamase: Compound 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x 5FL: 3-(pyridin-4-yl)benzoic acid(Non-covalent)

5FL.1: 12 residues within 4Å: Chain A: S.49, I.81, W.84, S.97, V.99, K.187, T.188, G.189, Y.190, S.223, L.226, R.229 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.84, A:Y.190, A:Y.190 Hydrogen bonds: A:S.97, A:S.97, A:T.188 Water bridges: A:K.187 Salt bridges: A:K.187, A:R.229 pi-Stacking: A:Y.190 5FL.2: 13 residues within 4Å: Chain B: S.49, K.52, I.81, W.84, S.97, V.99, L.137, T.188, G.189, Y.190, T.192, L.226, R.229 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.99, B:Y.190 Hydrogen bonds: B:T.188 Water bridges: B:S.49, B:K.187, B:K.187, B:R.229 Salt bridges: B:K.187, B:R.229 pi-Stacking: B:W.84, B:Y.190

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: Q.172, L.175, R.185 Chain B: Q.172, L.175, R.185 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lund, B.A. et al., Screening and Design of Inhibitor Scaffolds for the Antibiotic Resistance Oxacillinase-48 (OXA-48) through Surface Plasmon Resonance Screening. J.Med.Chem. (2016)

Release Date

2016-06-01

Peptides

Beta-lactamase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Beta-lactamase

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