SMTL ID : 5dvj.1 (1 other biounit)

Crystal structure of galactose complexed periplasmic glucose binding protein (ppGBP) from P. putida CSV86

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 14 residues within 4Å: Chain A: W.33, W.34, E.39, G.65, G.66, Q.88, K.90, H.141, W.248, W.268, N.299, D.301, K.337, H.377 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:W.34, A:G.66, A:Q.88, A:K.90, A:K.90, A:W.248, A:N.299, A:D.301, A:K.337 Salt bridges: A:K.90, A:H.377

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: L.182, A.183, H.184, G.185, Q.190, V.194, A.251, Q.263, I.264, M.265 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.185, A:Q.263, A:I.264

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: L.119, P.120, R.121, Q.344 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.121, A:Q.344 Water bridges: A:Q.344 SO4.4: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.159, A:K.159, A:V.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandey, S. et al., High Resolution Structures of Periplasmic Glucose-binding Protein of Pseudomonas putida CSV86 Reveal Structural Basis of Its Substrate Specificity. J.Biol.Chem. (2016)

Release Date

2016-02-17

Peptides

Binding protein component of ABC sugar transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Binding protein component of ABC sugar transporter

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