SMTL ID : 5dvp.2 (1 other biounit)

Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with Doripenem adduct

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x DRW: (2S,3R,4S)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid(Non-covalent)

DRW.1: 10 residues within 4Å: Chain A: M.246, Y.261, G.275, H.279, W.283, S.294, H.295, C.297, N.299 Ligands: POA.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.283 Hydrogen bonds: A:H.295, A:H.295, A:C.297 Water bridges: A:Y.261

1 x POA: PHOSPHONOACETALDEHYDE(Non-covalent)

POA.2: 5 residues within 4Å: Chain A: Y.261, S.274, G.275, H.295 Ligands: DRW.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, P. et al., Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol. (2017)

Release Date

2016-09-28

Peptides

L,D-transpeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

L,D-transpeptidase 2

Related Entries With Identical Sequence