SMTL ID : 5dw2.1

X-ray crystal structure of human BRD4(BD1) in complex with RVX297 to 1.12 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x 5GD: 2-{3,5-dimethyl-4-[2-(pyrrolidin-1-yl)ethoxy]phenyl}-5,7-dimethoxyquinazolin-4(3H)-one(Non-covalent)

5GD.1: 10 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, N.99, D.103, I.105 Ligands: EDO.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.41, A:V.46, A:L.51, A:L.53, A:I.105, A:I.105 Hydrogen bonds: A:N.99, A:N.99

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: W.40, P.41, D.104, I.105, M.108 Ligands: 5GD.1 No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62 EDO.4: 4 residues within 4Å: Chain A: M.64, Q.86, D.87, T.90 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.87, A:D.87, A:T.90 Water bridges: A:R.72 EDO.5: 3 residues within 4Å: Chain A: P.6, P.45, K.71 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kharenko, O.A. et al., RVX-297- a novel BD2 selective inhibitor of BET bromodomains. Biochem.Biophys.Res.Commun. (2016)

Release Date

2016-06-22

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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