SMTL ID : 5dx9.1

Structure of trehalose-6-phosphate phosphatase from Cryptococcus neoformans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x GLC- G6P: 6-O-phosphono-alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-G6P.1: 25 residues within 4Å: Chain A: N.26, Y.27, D.28, P.33, I.34, V.35, K.36, V.37, P.38, A.41, I.65, S.66, G.67, R.68, H.89, E.133, K.135, T.140, H.142, R.144, K.178, N.180, E.182, K.190 Ligands: MG.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.26, A:Y.27, A:D.28, A:D.28, A:G.67, A:R.68, A:E.133, A:K.135, A:T.140, A:H.142, A:P.33, A:V.35, A:V.35, A:R.144, A:K.178, A:N.180 Water bridges: A:N.180, A:N.180, A:K.190, A:K.190, A:D.213, A:D.28, A:K.36, A:K.178 Salt bridges: A:R.68, A:H.142, A:K.190

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: N.26, D.28, D.212, D.216 Ligands: GLC-G6P.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.28, A:D.212, H2O.1, H2O.1

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 7 residues within 4Å: Chain A: Y.143, E.152, C.155, K.156, L.159, V.176, L.181 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miao, Y. et al., Structures of trehalose-6-phosphate phosphatase from pathogenic fungi reveal the mechanisms of substrate recognition and catalysis. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-06-15

Peptides

trehalose-6-phosphate phosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

trehalose-6-phosphate phosphatase