SMTL ID : 5dz2.1 (1 other biounit)

Geosmin synthase from Streptomyces coelicolor N-terminal domain complexed with three Mg2+ ions and alendronic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.86, E.165 Ligands: MG.3, 212.4 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.86, H2O.1, H2O.1, H2O.2, H2O.2 MG.2: 4 residues within 4Å: Chain A: N.229, S.233, E.237 Ligands: 212.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.233, A:E.237, H2O.1 MG.3: 3 residues within 4Å: Chain A: D.86 Ligands: MG.1, 212.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.86, H2O.1, H2O.2, H2O.3

1 x 212: ALENDRONATE(Non-covalent)

212.4: 13 residues within 4Å: Chain A: V.82, F.83, D.86, R.184, N.229, S.233, R.236, E.237, R.325, Y.326 Ligands: MG.1, MG.2, MG.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.83 Hydrogen bonds: A:V.82, A:R.184, A:S.233, A:R.236, A:R.236, A:E.237, A:R.325, A:Y.326 Water bridges: A:D.86, A:E.161, A:R.184, A:R.184, A:R.184, A:N.229, A:N.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harris, G.G. et al., Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with alpha alpha Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence. Biochemistry (2015)

Release Date

2015-12-09

Peptides

Germacradienol/geosmin synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Germacradienol/geosmin synthase

Related Entries With Identical Sequence