- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x MAN: alpha-D-mannopyranose(Post Translational Modification)
- 18 x CA: CALCIUM ION(Non-covalent)
CA.6: 5 residues within 4Å:- Chain A: E.9, E.10, D.63, E.65, D.100
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.9, A:D.63, A:E.65, A:D.100
CA.7: 6 residues within 4Å:- Chain A: E.9, E.65, D.97, I.98, D.100, D.133
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.9, A:E.65, A:D.97, A:I.98, A:D.133
CA.8: 6 residues within 4Å:- Chain A: N.99, H.101, D.131, D.133, N.137, D.188
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:H.101, A:D.131, A:D.131, A:D.133, A:N.137
CA.9: 5 residues within 4Å:- Chain A: E.116, D.173, E.175, D.209, N.210
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.116, A:D.173, A:E.175, A:D.209
CA.10: 6 residues within 4Å:- Chain A: E.116, E.175, D.206, I.207, D.209, D.242
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.116, A:E.175, A:I.207, A:D.209, A:D.242
CA.11: 6 residues within 4Å:- Chain A: N.208, N.210, D.240, D.242, H.246, D.294
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:N.210, A:D.240, A:D.242, A:H.246, A:D.294
CA.12: 6 residues within 4Å:- Chain A: E.225, D.279, E.281, D.313, N.314
- Ligands: CA.13
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.225, A:D.279, A:E.281, A:D.313, A:D.313
CA.13: 7 residues within 4Å:- Chain A: E.225, E.281, D.310, V.311, D.313, D.345
- Ligands: CA.12
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.225, A:E.281, A:D.310, A:V.311, A:D.313
CA.14: 6 residues within 4Å:- Chain A: N.312, N.314, D.343, D.345, N.349, D.396
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:N.314, A:D.343, A:D.343, A:D.345, A:N.349
CA.18: 6 residues within 4Å:- Chain B: E.9, E.10, D.63, E.65, D.100, H.101
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.63, B:E.65, B:D.100
CA.19: 6 residues within 4Å:- Chain B: E.9, E.65, D.97, I.98, D.100, D.133
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.9, B:E.65, B:D.97, B:I.98, B:D.133
CA.20: 6 residues within 4Å:- Chain B: N.99, H.101, D.131, D.133, N.137, D.188
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.101, B:D.131, B:D.133, B:D.188
CA.21: 4 residues within 4Å:- Chain B: E.116, D.173, E.175, D.209
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.116, B:D.173, B:E.175, B:D.209
CA.22: 7 residues within 4Å:- Chain B: E.116, E.175, D.206, I.207, D.209, N.210, D.242
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.116, B:E.175, B:D.206, B:I.207, B:D.242
CA.23: 6 residues within 4Å:- Chain B: N.208, N.210, D.240, D.242, H.246, D.294
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:N.210, B:D.240, B:D.242, B:H.246, B:D.294
CA.24: 6 residues within 4Å:- Chain B: E.225, D.279, E.281, D.313, N.314
- Ligands: CA.25
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.279, B:E.281, B:D.313, B:D.313
CA.25: 7 residues within 4Å:- Chain B: E.225, E.281, D.310, V.311, D.313, D.345
- Ligands: CA.24
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.225, B:E.281, B:D.310, B:V.311, B:D.345
CA.26: 6 residues within 4Å:- Chain B: N.312, N.314, D.343, D.345, N.349, D.396
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:N.314, B:D.343, B:D.343, B:D.345, B:N.349
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goodman, K.M. et al., Structural Basis of Diverse Homophilic Recognition by Clustered alpha- and beta-Protocadherins. Neuron (2016)
- Release Date
- 2016-05-04
- Peptides
- Pcdhb8 protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x MAN: alpha-D-mannopyranose(Post Translational Modification)
- 18 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goodman, K.M. et al., Structural Basis of Diverse Homophilic Recognition by Clustered alpha- and beta-Protocadherins. Neuron (2016)
- Release Date
- 2016-05-04
- Peptides
- Pcdhb8 protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D