SMTL ID : 5e0a.1

Crystal Structure of the complex of Camel Peptidoglycan Recognition Protein (CPGRP-S) and N-Acetylglucosamine at 2.6 A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 10 residues within 4Å: Chain C: W.66, C.67, R.85, K.90, G.91, A.92, G.95, P.96, N.99, P.100 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:N.99 Hydrogen bonds: C:C.67, C:G.91, C:G.91, C:N.99 Water bridges: C:R.85 Salt bridges: C:R.85, C:K.90

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 11 residues within 4Å: Chain C: H.37, A.39, M.112, T.152, L.153, S.154 Chain D: H.37, A.39, T.152, L.153, S.154 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:T.152, C:T.152, C:L.153, D:L.153 Salt bridges: C:H.37, D:H.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dube, D. et al., Crystal Structure of the complex of Camel Peptidoglycan Recognition Protein (CPGRP-S) and N-Acetylglucosamine at 2.6 A. To Be Published

Release Date

2015-10-14

Peptides

Peptidoglycan recognition protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Peptidoglycan recognition protein 1

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