- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- monomer
- Ligands
- 1 x SER- PRO- LYS- ARG- ILE- ALA: RCC1(Non-covalent)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
SAH.2: 21 residues within 4Å:- Chain A: W.38, M.48, G.87, A.88, G.89, R.92, I.93, D.109, I.110, T.111, F.114, C.135, G.136, L.137, Q.138, Q.153, W.154, V.155, H.158, L.159
- Ligands: UNX.30
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:G.87, A:I.110, A:T.111, A:T.111, A:T.111, A:L.137, A:Q.138
- Water bridges: A:Q.153
- Salt bridges: A:R.92
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: Y.37, D.195, V.197, D.198
- Ligands: SER-PRO-LYS-ARG-ILE-ALA.1, UNX.24
1 PLIP interactions:1 interactions with chain A- Water bridges: A:G.50
GOL.4: 2 residues within 4Å:- Chain A: E.104, R.130
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.104, A:R.130
GOL.5: 11 residues within 4Å:- Chain A: W.154, V.155, I.156, G.157, D.185, N.186, S.200, V.201
- Ligands: SER-PRO-LYS-ARG-ILE-ALA.1, SER-PRO-LYS-ARG-ILE-ALA.1, UNX.30
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:V.155, A:G.157, A:N.186, A:V.201
- Water bridges: A:N.186, A:N.186, A:S.200
- 25 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.6: 4 residues within 4Å:- Chain A: E.27, T.160, Q.162, H.163
Ligand excluded by PLIPUNX.7: 3 residues within 4Å:- Chain A: V.45, R.96, Y.121
Ligand excluded by PLIPUNX.8: 3 residues within 4Å:- Chain A: L.101, F.102, R.103
Ligand excluded by PLIPUNX.9: 2 residues within 4Å:- Chain A: R.130, E.143
Ligand excluded by PLIPUNX.10: 1 residues within 4Å:- Chain A: P.177
Ligand excluded by PLIPUNX.11: 3 residues within 4Å:- Chain A: D.204, D.206, V.207
Ligand excluded by PLIPUNX.12: 3 residues within 4Å:- Chain A: R.210, C.213, S.214
Ligand excluded by PLIPUNX.13: 4 residues within 4Å:- Chain A: C.213, G.216, L.217
- Ligands: UNX.14
Ligand excluded by PLIPUNX.14: 3 residues within 4Å:- Chain A: C.213
- Ligands: UNX.13, UNX.27
Ligand excluded by PLIPUNX.15: 3 residues within 4Å:- Chain A: Y.31, K.35, I.110
Ligand excluded by PLIPUNX.16: 3 residues within 4Å:- Chain A: S.62, K.65
- Ligands: UNX.18
Ligand excluded by PLIPUNX.17: 1 residues within 4Å:- Chain A: R.69
Ligand excluded by PLIPUNX.18: 4 residues within 4Å:- Chain A: N.61, S.62
- Ligands: UNX.16, UNX.28
Ligand excluded by PLIPUNX.19: 2 residues within 4Å:- Chain A: E.27, K.28
Ligand excluded by PLIPUNX.20: 1 residues within 4Å:- Chain A: D.46
Ligand excluded by PLIPUNX.21: 1 residues within 4Å:- Chain A: H.54
Ligand excluded by PLIPUNX.22: 3 residues within 4Å:- Chain A: E.143, D.145, S.146
Ligand excluded by PLIPUNX.23: 2 residues within 4Å:- Chain A: P.42, G.47
Ligand excluded by PLIPUNX.24: 6 residues within 4Å:- Chain A: Y.37, W.38, G.47, G.50
- Ligands: SER-PRO-LYS-ARG-ILE-ALA.1, GOL.3
Ligand excluded by PLIPUNX.25: 2 residues within 4Å:- Chain A: H.234, Y.236
Ligand excluded by PLIPUNX.26: 4 residues within 4Å:- Chain A: F.70, N.76, T.78, N.178
Ligand excluded by PLIPUNX.27: 4 residues within 4Å:- Chain A: C.213, L.217, S.218
- Ligands: UNX.14
Ligand excluded by PLIPUNX.28: 1 residues within 4Å:- Ligands: UNX.18
Ligand excluded by PLIPUNX.29: 3 residues within 4Å:- Chain A: D.161, R.210, I.211
Ligand excluded by PLIPUNX.30: 5 residues within 4Å:- Chain A: W.38, W.154
- Ligands: SER-PRO-LYS-ARG-ILE-ALA.1, SAH.2, GOL.5
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dong, C. et al., Structural basis for substrate recognition by the human N-terminal methyltransferase 1. Genes Dev. (2015)
- Release Date
- 2015-10-28
- Peptides
- N-terminal Xaa-Pro-Lys N-methyltransferase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- monomer
- Ligands
- 1 x SER- PRO- LYS- ARG- ILE- ALA: RCC1(Non-covalent)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 25 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dong, C. et al., Structural basis for substrate recognition by the human N-terminal methyltransferase 1. Genes Dev. (2015)
- Release Date
- 2015-10-28
- Peptides
- N-terminal Xaa-Pro-Lys N-methyltransferase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A