- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- monomer
- Ligands
- 1 x SER- PRO- LYS- ARG- ILE- ALA: RCC1(Non-covalent)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
SAH.2: 21 residues within 4Å:- Chain A: W.38, M.48, G.87, A.88, G.89, R.92, I.93, D.109, I.110, T.111, F.114, C.135, G.136, L.137, Q.138, Q.153, W.154, V.155, H.158, L.159
- Ligands: UNX.31
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:G.87, A:I.110, A:T.111, A:T.111, A:L.137, A:Q.138, A:Q.138, A:Q.153
- Water bridges: A:Q.153
- Salt bridges: A:R.92
- 1 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 11 residues within 4Å:- Chain A: W.154, V.155, I.156, G.157, D.185, N.186, S.200, V.201
- Ligands: SER-PRO-LYS-ARG-ILE-ALA.1, SER-PRO-LYS-ARG-ILE-ALA.1, UNX.31
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:V.155, A:G.157, A:N.186, A:V.201
- Water bridges: A:N.186, A:N.186, A:S.200
- 29 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.4: 4 residues within 4Å:- Chain A: E.27, T.160, Q.162, H.163
Ligand excluded by PLIPUNX.5: 2 residues within 4Å:- Chain A: Q.117, Y.121
Ligand excluded by PLIPUNX.6: 1 residues within 4Å:- Chain A: S.62
Ligand excluded by PLIPUNX.7: 2 residues within 4Å:- Chain A: R.69, E.73
Ligand excluded by PLIPUNX.8: 2 residues within 4Å:- Chain A: R.69, F.70
Ligand excluded by PLIPUNX.9: 3 residues within 4Å:- Chain A: R.103, E.104, R.128
Ligand excluded by PLIPUNX.10: 2 residues within 4Å:- Chain A: E.112, Y.132
Ligand excluded by PLIPUNX.11: 3 residues within 4Å:- Chain A: Y.132, F.133, C.134
Ligand excluded by PLIPUNX.12: 3 residues within 4Å:- Chain A: D.139, F.140, T.141
Ligand excluded by PLIPUNX.13: 5 residues within 4Å:- Chain A: A.165, E.166, R.169, S.214, A.215
Ligand excluded by PLIPUNX.14: 2 residues within 4Å:- Chain A: L.175, R.241
Ligand excluded by PLIPUNX.15: 3 residues within 4Å:- Chain A: G.79, T.80, S.81
Ligand excluded by PLIPUNX.16: 3 residues within 4Å:- Chain A: D.195
- Ligands: UNX.18, UNX.32
Ligand excluded by PLIPUNX.17: 2 residues within 4Å:- Chain A: N.76, K.77
Ligand excluded by PLIPUNX.18: 2 residues within 4Å:- Ligands: UNX.16, UNX.32
Ligand excluded by PLIPUNX.19: 2 residues within 4Å:- Chain A: P.43, Q.117
Ligand excluded by PLIPUNX.20: 3 residues within 4Å:- Chain A: D.195
- Ligands: SER-PRO-LYS-ARG-ILE-ALA.1, SER-PRO-LYS-ARG-ILE-ALA.1
Ligand excluded by PLIPUNX.21: 2 residues within 4Å:- Chain A: R.72, T.80
Ligand excluded by PLIPUNX.22: 3 residues within 4Å:- Chain A: R.210, C.213, S.214
Ligand excluded by PLIPUNX.23: 3 residues within 4Å:- Chain A: L.205, H.234, Y.236
Ligand excluded by PLIPUNX.24: 3 residues within 4Å:- Chain A: L.101, F.102, R.103
Ligand excluded by PLIPUNX.25: 1 residues within 4Å:- Chain A: I.110
Ligand excluded by PLIPUNX.26: 1 residues within 4Å:- Chain A: D.139
Ligand excluded by PLIPUNX.27: 2 residues within 4Å:- Chain A: P.177
- Ligands: UNX.29
Ligand excluded by PLIPUNX.28: 4 residues within 4Å:- Chain A: W.38, G.47, G.50
- Ligands: SER-PRO-LYS-ARG-ILE-ALA.1
Ligand excluded by PLIPUNX.29: 3 residues within 4Å:- Chain A: D.148, R.176
- Ligands: UNX.27
Ligand excluded by PLIPUNX.30: 4 residues within 4Å:- Chain A: L.71, K.77, T.78, T.80
Ligand excluded by PLIPUNX.31: 5 residues within 4Å:- Chain A: W.38, W.154
- Ligands: SER-PRO-LYS-ARG-ILE-ALA.1, SAH.2, GOL.3
Ligand excluded by PLIPUNX.32: 3 residues within 4Å:- Ligands: SER-PRO-LYS-ARG-ILE-ALA.1, UNX.16, UNX.18
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dong, C. et al., Structural basis for substrate recognition by the human N-terminal methyltransferase 1. Genes Dev. (2015)
- Release Date
- 2015-10-28
- Peptides
- N-terminal Xaa-Pro-Lys N-methyltransferase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- monomer
- Ligands
- 1 x SER- PRO- LYS- ARG- ILE- ALA: RCC1(Non-covalent)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 29 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dong, C. et al., Structural basis for substrate recognition by the human N-terminal methyltransferase 1. Genes Dev. (2015)
- Release Date
- 2015-10-28
- Peptides
- N-terminal Xaa-Pro-Lys N-methyltransferase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B