- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 9 residues within 4Å:- Chain A: N.328, E.331, E.332, L.335, K.344
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN.1, NAG-NAG-BMA-MAN-MAN-MAN.1, NAG-NAG-BMA-MAN-MAN-MAN.1, NAG-NAG-BMA-MAN-MAN-MAN.1
No protein-ligand interaction detected (PLIP)NAG-NAG.3: 6 residues within 4Å:- Chain A: N.10, S.12, M.26
- Chain B: G.19, A.22, G.23
No protein-ligand interaction detected (PLIP)NAG-NAG.4: 13 residues within 4Å:- Chain B: Q.55, L.56, D.59, N.107, N.111
- Chain E: L.15, S.17, G.18, F.19, N.22, Q.422, G.424
- Chain F: S.102
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain E- Hydrogen bonds: B:D.59, E:S.17, E:S.17, E:N.22, E:Q.422
NAG-NAG.8: 9 residues within 4Å:- Chain C: N.328, E.331, E.332, L.335, K.344
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN.7, NAG-NAG-BMA-MAN-MAN-MAN.7, NAG-NAG-BMA-MAN-MAN-MAN.7, NAG-NAG-BMA-MAN-MAN-MAN.7
No protein-ligand interaction detected (PLIP)NAG-NAG.9: 6 residues within 4Å:- Chain C: N.10, S.12, M.26
- Chain D: G.19, A.22, G.23
No protein-ligand interaction detected (PLIP)NAG-NAG.10: 13 residues within 4Å:- Chain A: L.15, S.17, G.18, F.19, N.22, Q.422, G.424
- Chain B: S.102
- Chain D: Q.55, L.56, D.59, N.107, N.111
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain A- Hydrogen bonds: D:D.59, A:S.17, A:S.17, A:N.22, A:Q.422
NAG-NAG.14: 9 residues within 4Å:- Chain E: N.328, E.331, E.332, L.335, K.344
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN.13, NAG-NAG-BMA-MAN-MAN-MAN.13, NAG-NAG-BMA-MAN-MAN-MAN.13, NAG-NAG-BMA-MAN-MAN-MAN.13
No protein-ligand interaction detected (PLIP)NAG-NAG.15: 6 residues within 4Å:- Chain E: N.10, S.12, M.26
- Chain F: G.19, A.22, G.23
No protein-ligand interaction detected (PLIP)NAG-NAG.16: 13 residues within 4Å:- Chain C: L.15, S.17, G.18, F.19, N.22, Q.422, G.424
- Chain D: S.102
- Chain F: Q.55, L.56, D.59, N.107, N.111
5 PLIP interactions:1 interactions with chain F, 4 interactions with chain C- Hydrogen bonds: F:D.59, C:S.17, C:S.17, C:N.22, C:Q.422
- 3 x CAC: CACODYLATE ION(Non-covalent)
CAC.5: 9 residues within 4Å:- Chain A: D.54, S.55, R.56, S.82, G.83, V.114, N.115, W.320, H.357
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.54, A:S.55, A:G.83, A:N.115
CAC.11: 9 residues within 4Å:- Chain C: D.54, S.55, R.56, S.82, G.83, V.114, N.115, W.320, H.357
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.54, C:S.55, C:G.83, C:N.115
CAC.17: 9 residues within 4Å:- Chain E: D.54, S.55, R.56, S.82, G.83, V.114, N.115, W.320, H.357
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:D.54, E:S.55, E:G.83, E:N.115
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 3 residues within 4Å:- Chain B: N.58, N.61, E.65
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.58, B:N.61, B:E.65
NAG.12: 3 residues within 4Å:- Chain D: N.58, N.61, E.65
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.58, D:N.61, D:E.65
NAG.18: 3 residues within 4Å:- Chain F: N.58, N.61, E.65
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:N.58, F:N.61, F:E.65
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Song, H. et al., An Open Receptor-Binding Cavity of Hemagglutinin-Esterase-Fusion Glycoprotein from Newly-Identified Influenza D Virus: Basis for Its Broad Cell Tropism. PLoS Pathog. (2016)
- Release Date
- 2016-03-23
- Peptides
- Hemagglutinin-esterase: ACE
Hemagglutinin-esterase: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CC
CE
CB
DD
DF
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x CAC: CACODYLATE ION(Non-covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Song, H. et al., An Open Receptor-Binding Cavity of Hemagglutinin-Esterase-Fusion Glycoprotein from Newly-Identified Influenza D Virus: Basis for Its Broad Cell Tropism. PLoS Pathog. (2016)
- Release Date
- 2016-03-23
- Peptides
- Hemagglutinin-esterase: ACE
Hemagglutinin-esterase: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CC
CE
CB
DD
DF
D