SMTL ID : 5e7g.1

Crystal structure of Bacova_02650 with xylogluco-oligosaccharide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC- BGC- BGC- XYS- XYS- XYS: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-BGC-BGC-XYS-XYS-XYS.1: 9 residues within 4Å: Chain A: V.296, W.297, Y.330, W.331, Y.336, Q.374, E.379, F.381, Y.433 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: N.288, Y.289, D.290, N.315, T.317, D.449 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.288, A:T.317, A:D.449, A:D.449, H2O.1

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: N.380, R.425 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.380 Salt bridges: A:R.425 SO4.4: 3 residues within 4Å: Chain A: R.107, S.109, I.123 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.109, A:S.109 Water bridges: A:R.107 Salt bridges: A:R.107 SO4.5: 3 residues within 4Å: Chain A: P.67, N.68, E.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.68, A:N.68, A:E.69 SO4.6: 5 residues within 4Å: Chain A: H.36, L.37, G.38, G.39, S.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.38, A:G.39

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 7 residues within 4Å: Chain A: V.201, T.202, A.203, V.204, S.275, A.276, E.277 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.201, A:A.276, A:E.277 Water bridges: A:V.204, A:E.277 EDO.8: 5 residues within 4Å: Chain A: T.322, G.323, T.443, I.444, E.445 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.323, A:I.444 EDO.9: 1 residues within 4Å: Chain A: N.386 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.386 Water bridges: A:N.386

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tauzin, A.S. et al., Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont. Mbio (2016)

Release Date

2016-05-04

Peptides

IPT/TIG domain-containing protein BACOVA_02650: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

IPT/TIG domain-containing protein BACOVA_02650