SMTL ID : 5e8f.1 (1 other biounit)

Structure of Fully modified geranylgeranylated PDE6C Peptide in complex with PDE6D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x LYS- SER- LYS- THR- CMT: Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha'(Non-covalent)

LYS-SER-LYS-THR-CMT.1: 16 residues within 4Å: Chain A: I.52, L.53, C.55, V.58, V.79, E.87, W.89, I.108, E.109, A.110, A.111, Q.115, M.116, M.117, Y.148 Ligands: GER.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.87, A:E.87, A:E.109, A:E.109, A:E.109, A:A.111, A:M.117

1 x GER: GERAN-8-YL GERAN(Non-covalent)

GER.2: 14 residues within 4Å: Chain A: M.19, L.21, S.38, I.52, L.75, Q.77, I.128, T.130, F.132, S.142, L.146, Y.148 Ligands: LYS-SER-LYS-THR-CMT.1, LYS-SER-LYS-THR-CMT.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.21, A:I.52, A:L.75, A:I.128, A:F.132, A:L.146, A:L.146, A:Y.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fansa, E.K. et al., The N- and C-terminal ends of RPGR can bind to PDE6 delta. Embo Rep. (2015)

Release Date

2015-11-18

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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