SMTL ID : 5e9q.1 (1 other biounit)

DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND MOLECULE BF174

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: S.50, G.52, G.75, C.76, G.77, G.79, G.80, W.81, T.98, K.99, H.104, E.105, K.124, D.125, V.126, F.127, D.140, I.141 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.50, A:C.76, A:G.79, A:G.80, A:W.81, A:T.98, A:K.99, A:H.104, A:E.105, A:D.125, A:V.126 Water bridges: A:D.73, A:D.73, A:G.75, A:R.78, A:G.142 Salt bridges: A:E.105, A:D.140

1 x 5KY: 2-({[2-amino-4-(trifluoromethyl)phenyl]carbamoyl}amino)-4-methylbenzoic acid(Non-covalent)

5KY.2: 7 residues within 4Å: Chain A: R.78, G.101, P.102, G.103, H.104, E.105, E.106 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.101, A:G.103, A:H.104, A:H.104, A:H.104, A:E.106, A:E.106 Salt bridges: A:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benmansour, F. et al., Discovery of novel dengue virus NS5 methyltransferase non-nucleoside inhibitors by fragment-based drug design. Eur.J.Med.Chem. (2016)

Release Date

2016-10-26

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

Related Entries With Identical Sequence