- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ASP: ASPARTIC ACID(Non-covalent)
- 9 x NA: SODIUM ION(Non-functional Binders)
NA.2: 6 residues within 4Å:- Chain A: S.280, G.309, A.310, N.313, N.405, D.409
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.280, A:N.313
NA.3: 6 residues within 4Å:- Chain A: T.311, M.314, S.352, I.353, G.354, T.355
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.311
NA.4: 5 residues within 4Å:- Chain A: Y.91, T.94, S.95, N.313, D.315
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.94, A:D.315
NA.24: 6 residues within 4Å:- Chain B: T.311, M.314, S.352, I.353, G.354, T.355
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.355
NA.25: 7 residues within 4Å:- Chain B: S.280, G.309, A.310, N.313, N.405, V.406, D.409
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.280, B:A.310
NA.26: 5 residues within 4Å:- Chain B: Y.91, T.94, S.95, N.313, D.315
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.94, B:D.315
NA.49: 7 residues within 4Å:- Chain C: S.280, G.309, A.310, N.313, M.314, N.405, D.409
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.280, C:A.310
NA.50: 6 residues within 4Å:- Chain C: T.311, M.314, S.352, I.353, G.354, T.355
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.352
NA.51: 6 residues within 4Å:- Chain C: Y.90, Y.91, T.94, S.95, N.313, D.315
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.94, C:D.315
- 3 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
DMU.5: 7 residues within 4Å:- Chain A: L.198, G.202, Q.205, Y.206, R.289
- Chain C: R.173
- Ligands: PEG.57
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:R.173, A:R.289
- Hydrophobic interactions: A:Y.206
DMU.27: 6 residues within 4Å:- Chain B: L.198, G.201, G.202, Q.205, R.289, E.293
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.198, B:Q.205, B:E.293
- Salt bridges: B:R.289
DMU.52: 10 residues within 4Å:- Chain B: R.173
- Chain C: Y.9, L.10, L.198, G.201, G.202, Q.205, I.209, R.289, E.293
11 PLIP interactions:2 interactions with chain B, 9 interactions with chain C- Hydrogen bonds: B:R.173, B:R.173, C:L.198, C:Q.205, C:R.289, C:E.293
- Hydrophobic interactions: C:Y.9, C:L.10, C:Q.205, C:I.209
- Salt bridges: C:R.289
- 7 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.6: 5 residues within 4Å:- Chain A: T.43, Y.44, P.47, F.48
- Chain C: V.133
No protein-ligand interaction detected (PLIP)1PE.7: 4 residues within 4Å:- Chain A: R.107, L.108, N.110, K.232
No protein-ligand interaction detected (PLIP)1PE.28: 5 residues within 4Å:- Chain B: L.132, T.135, L.350, I.353, G.354
No protein-ligand interaction detected (PLIP)1PE.29: 3 residues within 4Å:- Chain B: I.162, I.165
- Ligands: PEG.31
No protein-ligand interaction detected (PLIP)1PE.30: 4 residues within 4Å:- Chain B: K.254, V.255, G.257
- Ligands: PEG.44
No protein-ligand interaction detected (PLIP)1PE.53: 3 residues within 4Å:- Chain C: T.135, L.350
- Ligands: P6G.66
No protein-ligand interaction detected (PLIP)1PE.54: 1 residues within 4Å:- Chain C: H.34
No protein-ligand interaction detected (PLIP)- 33 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.8: 4 residues within 4Å:- Chain A: I.162, Y.169
- Ligands: PEG.9, PEG.16
Ligand excluded by PLIPPEG.9: 4 residues within 4Å:- Chain A: P.77, G.81
- Ligands: PEG.8, PEG.16
Ligand excluded by PLIPPEG.10: 5 residues within 4Å:- Chain A: A.146, A.149, K.150
- Chain B: A.149
- Chain C: A.149
Ligand excluded by PLIPPEG.11: 2 residues within 4Å:- Chain A: E.183, R.187
Ligand excluded by PLIPPEG.12: 5 residues within 4Å:- Chain A: L.65, F.145, F.159
- Chain B: L.192
- Ligands: PEG.38
Ligand excluded by PLIPPEG.13: 3 residues within 4Å:- Chain A: K.421, E.422, L.423
Ligand excluded by PLIPPEG.14: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPEG.15: 2 residues within 4Å:- Chain A: H.34, V.224
Ligand excluded by PLIPPEG.16: 7 residues within 4Å:- Chain A: L.154, I.157, F.158, I.161, L.308
- Ligands: PEG.8, PEG.9
Ligand excluded by PLIPPEG.17: 4 residues within 4Å:- Chain A: E.152, A.356
- Ligands: PGE.19, PGE.20
Ligand excluded by PLIPPEG.31: 4 residues within 4Å:- Chain B: P.77, G.81
- Ligands: 1PE.29, P6G.47
Ligand excluded by PLIPPEG.32: 5 residues within 4Å:- Chain B: L.30, M.219, V.226, I.396
- Ligands: PEG.43
Ligand excluded by PLIPPEG.33: 2 residues within 4Å:- Chain B: I.245
- Ligands: PEG.35
Ligand excluded by PLIPPEG.34: 3 residues within 4Å:- Chain B: R.107, T.337, L.338
Ligand excluded by PLIPPEG.35: 4 residues within 4Å:- Chain B: L.22, F.275, M.403
- Ligands: PEG.33
Ligand excluded by PLIPPEG.36: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPEG.37: 3 residues within 4Å:- Chain B: N.172, N.174, R.179
Ligand excluded by PLIPPEG.38: 5 residues within 4Å:- Chain B: L.65, F.145, L.148, F.159
- Ligands: PEG.12
Ligand excluded by PLIPPEG.39: 4 residues within 4Å:- Chain B: R.82, K.86, V.89
- Ligands: PEG.40
Ligand excluded by PLIPPEG.40: 3 residues within 4Å:- Chain B: K.86, L.252
- Ligands: PEG.39
Ligand excluded by PLIPPEG.41: 4 residues within 4Å:- Chain B: G.122, K.123, G.374, D.376
Ligand excluded by PLIPPEG.42: 2 residues within 4Å:- Chain B: V.227
- Ligands: PEG.43
Ligand excluded by PLIPPEG.43: 3 residues within 4Å:- Chain B: V.226
- Ligands: PEG.32, PEG.42
Ligand excluded by PLIPPEG.44: 3 residues within 4Å:- Chain B: G.257, K.418
- Ligands: 1PE.30
Ligand excluded by PLIPPEG.55: 5 residues within 4Å:- Chain C: P.77, A.78, G.81
- Ligands: PEG.56, PEG.63
Ligand excluded by PLIPPEG.56: 5 residues within 4Å:- Chain C: P.77, I.162, I.165, Y.169
- Ligands: PEG.55
Ligand excluded by PLIPPEG.57: 5 residues within 4Å:- Chain A: L.198, I.199
- Chain C: I.165, Y.169
- Ligands: DMU.5
Ligand excluded by PLIPPEG.58: 2 residues within 4Å:- Chain B: V.133
- Chain C: Y.44
Ligand excluded by PLIPPEG.59: 3 residues within 4Å:- Chain B: R.177
- Chain C: L.186, R.187
Ligand excluded by PLIPPEG.60: 3 residues within 4Å:- Chain C: L.65, L.148, F.159
Ligand excluded by PLIPPEG.61: 3 residues within 4Å:- Chain C: Y.90, L.252, F.256
Ligand excluded by PLIPPEG.62: 5 residues within 4Å:- Chain C: R.107, L.336, T.337, L.338, Q.341
Ligand excluded by PLIPPEG.63: 4 residues within 4Å:- Chain C: I.139, I.157, F.158
- Ligands: PEG.55
Ligand excluded by PLIP- 7 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.18: 2 residues within 4Å:- Chain A: I.353, G.354
No protein-ligand interaction detected (PLIP)PGE.19: 5 residues within 4Å:- Chain A: T.135, L.154, I.312, I.353
- Ligands: PEG.17
No protein-ligand interaction detected (PLIP)PGE.20: 8 residues within 4Å:- Chain A: G.151, S.281, T.311, A.356, G.357, V.358
- Ligands: PEG.17, PGE.21
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.281, A:T.311, A:G.357
PGE.21: 8 residues within 4Å:- Chain A: A.149, K.150, G.151
- Chain C: T.142, N.143, A.146, K.150
- Ligands: PGE.20
No protein-ligand interaction detected (PLIP)PGE.45: 2 residues within 4Å:- Chain B: R.107, L.108
No protein-ligand interaction detected (PLIP)PGE.64: 7 residues within 4Å:- Chain C: L.22, M.271, I.272, F.275, M.403
- Ligands: PGE.65, P6G.67
No protein-ligand interaction detected (PLIP)PGE.65: 5 residues within 4Å:- Chain C: Y.238, F.242, I.245
- Ligands: PGE.64, P6G.67
No protein-ligand interaction detected (PLIP)- 5 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
P6G.22: 4 residues within 4Å:- Chain A: V.226, V.227, A.231, G.235
No protein-ligand interaction detected (PLIP)P6G.46: 9 residues within 4Å:- Chain B: T.135, I.139, G.151, S.281, T.311, I.312, A.356, G.357, V.358
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.281, B:G.357
P6G.47: 5 residues within 4Å:- Chain B: R.82, G.84, V.85, V.88
- Ligands: PEG.31
No protein-ligand interaction detected (PLIP)P6G.66: 7 residues within 4Å:- Chain C: I.139, G.151, L.154, S.281, I.353, G.354
- Ligands: 1PE.53
No protein-ligand interaction detected (PLIP)P6G.67: 7 residues within 4Å:- Chain C: V.234, G.235, Y.238, T.239, F.242
- Ligands: PGE.64, PGE.65
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Guskov, A. et al., Coupled binding mechanism of three sodium ions and aspartate in the glutamate transporter homologue GltTk. Nat Commun (2016)
- Release Date
- 2016-09-28
- Peptides
- Proton/glutamate symporter, SDF family: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ASP: ASPARTIC ACID(Non-covalent)
- 9 x NA: SODIUM ION(Non-functional Binders)
- 3 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)
- 7 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 33 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 7 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 5 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Guskov, A. et al., Coupled binding mechanism of three sodium ions and aspartate in the glutamate transporter homologue GltTk. Nat Commun (2016)
- Release Date
- 2016-09-28
- Peptides
- Proton/glutamate symporter, SDF family: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.