SMTL ID : 5e9v.1

Crystal structure of BRD9 bromodomain in complex with an indolizine ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 5L0: 1-[1-(imidazo[1,2-a]pyridin-5-yl)-7-(morpholin-4-yl)indolizin-3-yl]ethanone(Non-covalent)

5L0.1: 9 residues within 4Å: Chain A: F.33, F.34, F.36, P.37, V.38, I.42, Y.88, N.89, Y.95 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.33, A:F.34, A:V.38, A:I.42, A:Y.88, A:Y.95 Hydrogen bonds: A:N.89 pi-Stacking: A:Y.95, A:Y.95 5L0.3: 11 residues within 4Å: Chain B: F.33, F.34, F.36, P.37, V.38, I.42, A.43, P.44, N.89, Y.95 Ligands: EDO.4 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.33, B:F.34, B:I.42, B:A.43 Hydrogen bonds: B:N.89 pi-Stacking: B:Y.95, B:Y.95

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: H.20, F.21, M.109, R.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.109, A:R.114 EDO.4: 1 residues within 4Å: Ligands: 5L0.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tallant, C. et al., Crystal structure of BRD9 bromodomain in complex with an indolizine ligand. To Be Published

Release Date

2015-10-28

Peptides

Bromodomain-containing protein 9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bromodomain-containing protein 9

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