SMTL ID : 5eb2.1

Trp-bound YfiR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

homo-dimer

Ligands

1 x TRP: TRYPTOPHAN(Non-covalent)

TRP.1: 3 residues within 4Å: Chain A: I.138, V.145, P.147 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:I.138, A:I.138, A:P.147 Hydrogen bonds: A:V.145, A:V.145 Salt bridges: A:R.144

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.7, S.9, I.10 Chain B: R.68, A.69, N.72 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:I.10, B:R.68, B:A.69, B:N.72 Salt bridges: A:R.7 SO4.3: 7 residues within 4Å: Chain A: R.67, R.68, A.69, N.72 Chain B: T.8, S.9, I.10 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:A.69, A:N.72, B:T.8, B:T.8, B:S.9, B:I.10 Salt bridges: A:R.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, M. et al., Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system. Protein Cell (2016)

Release Date

2016-05-18

Peptides

YfiR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

YfiR

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