SMTL ID : 5eex.1 (1 other biounit)

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 9.02 MGy

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-11-mer

Ligands

11 x TRP: TRYPTOPHAN(Non-covalent)

TRP.1: 14 residues within 4Å: Chain A: T.23, R.24, G.25, D.27, T.28, S.51 Chain B: G.21, H.32, A.44, Q.45, T.47, H.49, T.50, I.53 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:A.44, B:T.50, B:I.53 Hydrogen bonds: B:Q.45, B:T.50, B:T.50, A:G.25, A:G.25, A:S.51 Water bridges: B:E.48, B:H.49 TRP.2: 14 residues within 4Å: Chain B: T.23, R.24, G.25, D.27, T.28, S.51 Chain C: G.21, H.32, A.44, Q.45, T.47, H.49, T.50, I.53 11 PLIP interactions: 3 interactions with chain B, 8 interactions with chain C, Hydrogen bonds: B:G.25, B:G.25, B:S.51, C:Q.45, C:T.50, C:T.50 Hydrophobic interactions: C:A.44, C:T.50, C:I.53 Water bridges: C:E.48, C:H.49 TRP.3: 14 residues within 4Å: Chain C: T.23, R.24, G.25, D.27, T.28, S.51 Chain D: G.21, H.31, A.44, Q.45, T.47, H.49, T.50, I.53 10 PLIP interactions: 7 interactions with chain D, 3 interactions with chain C, Hydrophobic interactions: D:A.44, D:T.50, D:I.53 Hydrogen bonds: D:Q.45, D:T.50, D:T.50, C:G.25, C:G.25, C:S.51 Water bridges: D:E.48 TRP.4: 14 residues within 4Å: Chain D: T.23, R.24, G.25, D.27, T.28, S.51 Chain E: G.21, H.32, A.44, Q.45, T.47, H.49, T.50, I.53 12 PLIP interactions: 8 interactions with chain E, 4 interactions with chain D, Hydrophobic interactions: E:A.44, E:T.50, E:I.53, D:T.28 Hydrogen bonds: E:Q.45, E:T.50, E:T.50, E:T.50, D:G.25, D:G.25, D:S.51 Water bridges: E:H.49 TRP.5: 14 residues within 4Å: Chain E: T.23, R.24, G.25, D.27, T.28, S.51 Chain F: G.21, H.32, A.44, Q.45, T.47, H.49, T.50, I.53 10 PLIP interactions: 6 interactions with chain F, 4 interactions with chain E Hydrophobic interactions: F:T.50, F:I.53, E:T.28 Hydrogen bonds: F:Q.45, F:T.50, F:T.50, E:G.25, E:G.25, E:S.51 Water bridges: F:E.48 TRP.6: 16 residues within 4Å: Chain F: T.23, R.24, G.25, D.27, T.28, S.51, A.52 Chain G: I.20, G.21, H.32, A.44, Q.45, T.47, H.49, T.50, I.53 9 PLIP interactions: 6 interactions with chain G, 3 interactions with chain F Hydrophobic interactions: G:A.44, G:I.53 Hydrogen bonds: G:Q.45, G:T.50, G:T.50, F:G.25, F:G.25, F:S.51 Water bridges: G:H.49 TRP.7: 16 residues within 4Å: Chain G: T.23, R.24, G.25, D.27, T.28, S.51 Chain H: I.20, G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53 10 PLIP interactions: 3 interactions with chain G, 7 interactions with chain H, Hydrogen bonds: G:G.25, G:G.25, G:S.51, H:Q.45, H:T.50, H:T.50 Hydrophobic interactions: H:T.50, H:I.53 Water bridges: H:H.49, H:H.49 TRP.8: 15 residues within 4Å: Chain H: T.23, R.24, G.25, D.27, T.28, S.51 Chain I: I.20, G.21, H.32, A.44, Q.45, T.47, H.49, T.50, I.53 10 PLIP interactions: 6 interactions with chain I, 4 interactions with chain H Hydrophobic interactions: I:T.50, I:I.53, H:T.28 Hydrogen bonds: I:Q.45, I:T.50, I:T.50, H:G.25, H:G.25, H:S.51 Water bridges: I:H.49 TRP.9: 16 residues within 4Å: Chain I: T.23, R.24, G.25, D.27, T.28, S.51 Chain J: I.20, G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53 11 PLIP interactions: 8 interactions with chain J, 3 interactions with chain I, Hydrophobic interactions: J:A.44, J:T.50, J:I.53 Hydrogen bonds: J:Q.45, J:T.50, J:T.50, I:G.25, I:G.25, I:S.51 Water bridges: J:H.49, J:H.49 TRP.10: 14 residues within 4Å: Chain J: T.23, R.24, G.25, D.27, T.28, S.51 Chain K: G.21, H.32, A.44, Q.45, T.47, H.49, T.50, I.53 13 PLIP interactions: 9 interactions with chain K, 4 interactions with chain J, Hydrophobic interactions: K:A.44, K:T.50, K:I.53, J:T.28 Hydrogen bonds: K:Q.45, K:Q.45, K:T.50, K:T.50, J:G.25, J:G.25, J:S.51 Water bridges: K:H.49, K:H.49 TRP.11: 15 residues within 4Å: Chain A: G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53 Chain K: T.23, R.24, G.25, D.27, T.28, S.51 13 PLIP interactions: 8 interactions with chain A, 4 interactions with chain K, 1 Ligand-Ligand interactions Hydrophobic interactions: A:A.44, A:T.50, A:I.53 Hydrogen bonds: A:Q.45, A:Q.45, A:T.50, K:T.23, K:G.25, K:G.25, K:S.51, W.11 Water bridges: A:H.49, A:H.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bury, C.S. et al., RNA protects a nucleoprotein complex against radiation damage. Acta Crystallogr D Struct Biol (2016)

Release Date

2016-05-04

Peptides

Transcription attenuation protein MtrB: ABCDEFGHIJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

Transcription attenuation protein MtrB

Related Entries With Identical Sequence