SMTL ID : 5ehf.1

Laccase from Antrodiella faginea

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: V.327, N.329, S.385, P.387, N.434 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.327 Water bridges: A:N.329

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: L.303, N.411 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain A: N.335, T.337, N.338, S.345 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.337 Water bridges: A:S.345

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: A.80, H.111, L.112, S.113, F.346, P.348, F.448, L.457 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.111, A:S.113 GOL.5: 6 residues within 4Å: Chain A: L.237, T.238, Y.245, L.302, L.303, E.304 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.238, A:E.304 Water bridges: A:T.238, A:T.238, A:Q.243, A:Y.245, A:E.304, A:V.305, A:A.410

4 x CU: COPPER (II) ION(Non-covalent)

CU.6: 6 residues within 4Å: Chain A: H.111, H.398, H.400, H.450 Ligands: CU.7, CU.8 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.111, A:H.400, A:H.450, H2O.4, H2O.9 CU.7: 8 residues within 4Å: Chain A: H.64, H.66, W.107, H.109, H.398, H.452 Ligands: CU.6, CU.8 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.66, A:H.109, A:H.452, H2O.4, H2O.9 CU.8: 7 residues within 4Å: Chain A: H.64, H.66, G.67, H.398, H.400 Ligands: CU.6, CU.7 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.64, A:H.398, H2O.4, H2O.12 CU.9: 5 residues within 4Å: Chain A: H.395, C.451, I.453, H.456, F.461 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.395, A:C.451, A:H.456

2 x ZN: ZINC ION(Non-covalent)

ZN.10: 2 residues within 4Å: Chain A: H.362, D.366 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.362, A:D.366, A:D.366, H2O.14 ZN.11: 3 residues within 4Å: Chain A: H.153, T.154, D.167 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.167, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glazunova, O.A. et al., Structure-function study of two new middle-redox potential laccases from basidiomycetes Antrodiella faginea and Steccherinum murashkinskyi. Int. J. Biol. Macromol. (2018)

Release Date

2015-12-23

Peptides

Laccase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Laccase