- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x PT5: [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate(Non-covalent)
- 3 x CPL: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
CPL.2: 7 residues within 4Å:- Chain A: R.56, L.96, S.99, I.100, Y.103, Y.107
- Ligands: DMU.9
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.96, A:I.100
- pi-Cation interactions: A:Y.107
CPL.14: 7 residues within 4Å:- Chain B: R.56, L.96, S.99, I.100, Y.103, Y.107
- Ligands: DMU.21
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.96, B:I.100
- pi-Cation interactions: B:Y.107
CPL.26: 7 residues within 4Å:- Chain C: R.56, L.96, S.99, I.100, Y.103, Y.107
- Ligands: DMU.33
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:L.96, C:I.100
- pi-Cation interactions: C:Y.107
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 15 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 3 residues within 4Å:- Chain A: K.171
- Ligands: PT5.1, ACT.5
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:K.171
ACT.5: 5 residues within 4Å:- Chain A: S.42, H.45, D.46
- Ligands: ACT.4, ACT.8
3 PLIP interactions:3 interactions with chain A- Water bridges: A:S.42
- Salt bridges: A:H.45, A:K.171
ACT.6: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)ACT.7: 3 residues within 4Å:- Chain A: K.26, Y.28, A.93
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:Y.28
ACT.8: 5 residues within 4Å:- Chain A: L.41, H.45, F.114, T.118
- Ligands: ACT.5
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:H.45, A:F.114
- Water bridges: A:K.123, A:K.123
- Salt bridges: A:K.123
ACT.16: 3 residues within 4Å:- Chain B: K.171
- Ligands: PT5.13, ACT.17
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:K.171
ACT.17: 5 residues within 4Å:- Chain B: S.42, H.45, D.46
- Ligands: ACT.16, ACT.20
3 PLIP interactions:3 interactions with chain B- Water bridges: B:S.42
- Salt bridges: B:H.45, B:K.171
ACT.18: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)ACT.19: 3 residues within 4Å:- Chain B: K.26, Y.28, A.93
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:Y.28
ACT.20: 5 residues within 4Å:- Chain B: L.41, H.45, F.114, T.118
- Ligands: ACT.17
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:H.45, B:F.114
- Water bridges: B:K.123, B:K.123
- Salt bridges: B:K.123
ACT.28: 3 residues within 4Å:- Chain C: K.171
- Ligands: PT5.25, ACT.29
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:K.171
ACT.29: 5 residues within 4Å:- Chain C: S.42, H.45, D.46
- Ligands: ACT.28, ACT.32
3 PLIP interactions:3 interactions with chain C- Water bridges: C:S.42
- Salt bridges: C:H.45, C:K.171
ACT.30: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)ACT.31: 3 residues within 4Å:- Chain C: K.26, Y.28, A.93
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:Y.28
ACT.32: 5 residues within 4Å:- Chain C: L.41, H.45, F.114, T.118
- Ligands: ACT.29
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:H.45, C:F.114
- Water bridges: C:K.123, C:K.123
- Salt bridges: C:K.123
- 12 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)(Post Translational Modification)
DMU.9: 4 residues within 4Å:- Chain A: Y.28, A.93, L.96
- Ligands: CPL.2
2 PLIP interactions:2 interactions with chain A- Water bridges: A:A.93, A:L.97
DMU.10: 7 residues within 4Å:- Chain A: Y.21, L.25, K.26, Y.30, F.31, G.125, L.126
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.30
- Hydrogen bonds: A:K.26, A:K.26, A:K.26
DMU.11: 3 residues within 4Å:- Chain A: Y.30, L.116, A.117
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.116, A:A.117
DMU.12: 13 residues within 4Å:- Chain A: L.154, L.158, T.195, K.196, V.199
- Chain C: F.54, H.58, F.60, S.61, W.63, L.64, A.177
- Ligands: PT5.1
16 PLIP interactions:8 interactions with chain A, 8 interactions with chain C- Hydrophobic interactions: A:L.154, A:L.158, A:V.199, A:V.199, C:F.60, C:F.60, C:W.63, C:L.64
- Hydrogen bonds: A:T.195, A:K.196, C:S.61, C:A.177
- Water bridges: A:S.192, A:T.195, C:S.61
- Salt bridges: C:H.58
DMU.21: 4 residues within 4Å:- Chain B: Y.28, A.93, L.96
- Ligands: CPL.14
2 PLIP interactions:2 interactions with chain B- Water bridges: B:A.93, B:L.97
DMU.22: 7 residues within 4Å:- Chain B: Y.21, L.25, K.26, Y.30, F.31, G.125, L.126
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.30
- Hydrogen bonds: B:K.26, B:K.26, B:K.26
DMU.23: 3 residues within 4Å:- Chain B: Y.30, L.116, A.117
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.116, B:A.117
DMU.24: 13 residues within 4Å:- Chain A: F.54, H.58, F.60, S.61, W.63, L.64, A.177
- Chain B: L.154, L.158, T.195, K.196, V.199
- Ligands: PT5.13
16 PLIP interactions:8 interactions with chain A, 8 interactions with chain B- Hydrophobic interactions: A:F.60, A:F.60, A:W.63, A:L.64, B:L.154, B:L.158, B:V.199, B:V.199
- Hydrogen bonds: A:S.61, A:A.177, B:T.195, B:K.196
- Water bridges: A:S.61, B:S.192, B:T.195
- Salt bridges: A:H.58
DMU.33: 4 residues within 4Å:- Chain C: Y.28, A.93, L.96
- Ligands: CPL.26
2 PLIP interactions:2 interactions with chain C- Water bridges: C:A.93, C:L.97
DMU.34: 7 residues within 4Å:- Chain C: Y.21, L.25, K.26, Y.30, F.31, G.125, L.126
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:Y.30
- Hydrogen bonds: C:K.26, C:K.26, C:K.26
DMU.35: 3 residues within 4Å:- Chain C: Y.30, L.116, A.117
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.116, C:A.117
DMU.36: 13 residues within 4Å:- Chain B: F.54, H.58, F.60, S.61, W.63, L.64, A.177
- Chain C: L.154, L.158, T.195, K.196, V.199
- Ligands: PT5.25
16 PLIP interactions:8 interactions with chain C, 8 interactions with chain B- Hydrophobic interactions: C:L.154, C:L.158, C:V.199, C:V.199, B:F.60, B:F.60, B:W.63, B:L.64
- Hydrogen bonds: C:T.195, C:K.196, B:S.61, B:A.177
- Water bridges: C:S.192, C:T.195, B:S.61
- Salt bridges: B:H.58
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, H.T. et al., Pore architecture of TRIC channels and insights into their gating mechanism. Nature (2016)
- Release Date
- 2016-10-05
- Peptides
- Uncharacterized protein Y57A10A.28: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x PT5: [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate(Non-covalent)
- 3 x CPL: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 15 x ACT: ACETATE ION(Non-functional Binders)
- 12 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, H.T. et al., Pore architecture of TRIC channels and insights into their gating mechanism. Nature (2016)
- Release Date
- 2016-10-05
- Peptides
- Uncharacterized protein Y57A10A.28: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A