- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.80 Å
- Oligo State
- homo-octamer
- Ligands
- 2 x DC- DT- DT- DC- DT- DT- DT- DC: DNA (5'-D(*CP*TP*TP*CP*TP*CP*TP*C)-3')(Non-covalent)
- 2 x DA- DG- DT- DG- DT- DC- DT- DT: DNA (5'-D(*AP*GP*TP*GP*TP*CP*TP*T)-3')(Non-functional Binders)(Non-covalent)
DA-DG-DT-DG-DT-DC-DT-DT.3: 10 residues within 4Å:- Chain I: G.34, A.35, A.36, G.37, A.38, C.39, A.40, C.41, T.42
- Ligands: DC-DT-DT-DC-DT-DT-DT-DC.1
Protein-ligand interaction information (PLIP) not availableDA-DG-DT-DG-DT-DC-DT-DT.4: 10 residues within 4Å:- Chain C: T.144
- Chain K: A.35, A.36, G.37, A.38, C.39, A.40, C.41, T.42
- Ligands: DC-DT-DT-DC-DT-DT-DT-DC.2
Protein-ligand interaction information (PLIP) not available- 8 x ZN: ZINC ION(Non-covalent)
ZN.5: 4 residues within 4Å:- Chain A: H.9, H.13, C.37, C.40
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.9, A:H.13, A:C.37, A:C.40
ZN.10: 4 residues within 4Å:- Chain B: H.9, H.13, C.37, C.40
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.9, B:H.13, B:C.37, B:C.40
ZN.31: 4 residues within 4Å:- Chain C: H.9, H.13, C.37, C.40
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.9, C:H.13, C:C.37, C:C.40
ZN.32: 4 residues within 4Å:- Chain D: H.9, H.13, C.37, C.40
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:H.9, D:H.13, D:C.37, D:C.40
ZN.33: 4 residues within 4Å:- Chain E: H.9, H.13, C.37, C.40
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:H.9, E:H.13, E:C.37, E:C.40
ZN.34: 4 residues within 4Å:- Chain F: H.9, H.13, C.37, C.40
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:H.9, F:H.13, F:C.37, F:C.40
ZN.47: 4 residues within 4Å:- Chain G: H.9, H.13, C.37, C.40
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:H.9, G:H.13, G:C.37, G:C.40
ZN.48: 4 residues within 4Å:- Chain H: H.9, H.13, C.37, C.40
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:H.9, H:H.13, H:C.37, H:C.40
- 36 x W: TUNGSTEN ION(Non-functional Binders)(Non-covalent)
W.6: 4 residues within 4Å:- Ligands: W.7, W.8, W.9, W.29
Ligand excluded by PLIPW.7: 4 residues within 4Å:- Ligands: W.6, W.23, W.29, W.30
Ligand excluded by PLIPW.8: 4 residues within 4Å:- Ligands: W.6, W.9, W.23, W.27
Ligand excluded by PLIPW.9: 4 residues within 4Å:- Ligands: W.6, W.8, W.25, W.28
Ligand excluded by PLIPW.11: 4 residues within 4Å:- Ligands: W.16, W.17, W.19, W.21
Ligand excluded by PLIPW.12: 4 residues within 4Å:- Ligands: W.16, W.17, W.18, W.22
Ligand excluded by PLIPW.13: 4 residues within 4Å:- Ligands: W.15, W.20, W.21, W.22
Ligand excluded by PLIPW.14: 4 residues within 4Å:- Ligands: W.15, W.18, W.19, W.20
Ligand excluded by PLIPW.15: 4 residues within 4Å:- Ligands: W.13, W.14, W.18, W.22
Ligand excluded by PLIPW.16: 4 residues within 4Å:- Ligands: W.11, W.12, W.21, W.22
Ligand excluded by PLIPW.17: 4 residues within 4Å:- Ligands: W.11, W.12, W.18, W.19
Ligand excluded by PLIPW.18: 5 residues within 4Å:- Chain B: P.69
- Ligands: W.12, W.14, W.15, W.17
Ligand excluded by PLIPW.19: 4 residues within 4Å:- Ligands: W.11, W.14, W.17, W.20
Ligand excluded by PLIPW.20: 4 residues within 4Å:- Ligands: W.13, W.14, W.19, W.21
Ligand excluded by PLIPW.21: 4 residues within 4Å:- Ligands: W.11, W.13, W.16, W.20
Ligand excluded by PLIPW.22: 4 residues within 4Å:- Ligands: W.12, W.13, W.15, W.16
Ligand excluded by PLIPW.23: 6 residues within 4Å:- Chain A: R.74
- Chain B: R.74
- Ligands: W.7, W.8, W.27, W.30
Ligand excluded by PLIPW.24: 4 residues within 4Å:- Ligands: W.26, W.28, W.29, W.30
Ligand excluded by PLIPW.25: 4 residues within 4Å:- Ligands: W.9, W.26, W.27, W.28
Ligand excluded by PLIPW.26: 5 residues within 4Å:- Chain B: R.74
- Ligands: W.24, W.25, W.27, W.30
Ligand excluded by PLIPW.27: 5 residues within 4Å:- Chain B: R.74
- Ligands: W.8, W.23, W.25, W.26
Ligand excluded by PLIPW.28: 4 residues within 4Å:- Ligands: W.9, W.24, W.25, W.29
Ligand excluded by PLIPW.29: 4 residues within 4Å:- Ligands: W.6, W.7, W.24, W.28
Ligand excluded by PLIPW.30: 5 residues within 4Å:- Chain B: P.73
- Ligands: W.7, W.23, W.24, W.26
Ligand excluded by PLIPW.35: 4 residues within 4Å:- Ligands: W.40, W.42, W.44, W.46
Ligand excluded by PLIPW.36: 4 residues within 4Å:- Ligands: W.40, W.41, W.45, W.46
Ligand excluded by PLIPW.37: 4 residues within 4Å:- Ligands: W.39, W.43, W.44, W.45
Ligand excluded by PLIPW.38: 4 residues within 4Å:- Ligands: W.39, W.41, W.42, W.43
Ligand excluded by PLIPW.39: 5 residues within 4Å:- Chain F: R.70
- Ligands: W.37, W.38, W.41, W.45
Ligand excluded by PLIPW.40: 4 residues within 4Å:- Ligands: W.35, W.36, W.41, W.42
Ligand excluded by PLIPW.41: 4 residues within 4Å:- Ligands: W.36, W.38, W.39, W.40
Ligand excluded by PLIPW.42: 4 residues within 4Å:- Ligands: W.35, W.38, W.40, W.43
Ligand excluded by PLIPW.43: 4 residues within 4Å:- Ligands: W.37, W.38, W.42, W.44
Ligand excluded by PLIPW.44: 4 residues within 4Å:- Ligands: W.35, W.37, W.43, W.46
Ligand excluded by PLIPW.45: 5 residues within 4Å:- Chain F: P.69
- Ligands: W.36, W.37, W.39, W.46
Ligand excluded by PLIPW.46: 4 residues within 4Å:- Ligands: W.35, W.36, W.44, W.45
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yin, Z. et al., Crystal structure of the Rous sarcoma virus intasome. Nature (2016)
- Release Date
- 2016-02-17
- Peptides
- Gag-Pro-Pol polyprotein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.80 Å
- Oligo State
- homo-octamer
- Ligands
- 2 x DC- DT- DT- DC- DT- DT- DT- DC: DNA (5'-D(*CP*TP*TP*CP*TP*CP*TP*C)-3')(Non-covalent)
- 2 x DA- DG- DT- DG- DT- DC- DT- DT: DNA (5'-D(*AP*GP*TP*GP*TP*CP*TP*T)-3')(Non-functional Binders)(Non-covalent)
- 8 x ZN: ZINC ION(Non-covalent)
- 36 x W: TUNGSTEN ION(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yin, Z. et al., Crystal structure of the Rous sarcoma virus intasome. Nature (2016)
- Release Date
- 2016-02-17
- Peptides
- Gag-Pro-Pol polyprotein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H