SMTL ID : 5ejz.1

Bacterial Cellulose Synthase Product-Bound State

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

hetero-1-1-mer

Ligands

1 x UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK: poly(unk)(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1: 4 residues within 4Å: Chain B: A.509, V.511, P.520, R.521 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:R.521 Hydrogen bonds: B:A.509

1 x BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- SHG: 2-deoxy-2-fluoro-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-SHG.2: 61 residues within 4Å: Chain A: Y.81, E.109, S.112, I.115, F.116, N.119, K.227, D.247, H.277, E.298, M.301, F.302, Y.303, I.306, C.319, T.342, E.343, D.344, W.384, M.388, N.413, S.414, F.417, W.418, R.424, F.427, A.430, P.431, Y.434, G.438, I.439, E.440, F.442, A.444, V.449, M.453, Y.456, S.460, R.472, S.477, E.478, E.481, F.504, G.548, D.549, V.552, V.555, V.556, W.559 Chain B: G.371, R.384, M.385, L.386, P.387, R.390, L.399, V.566, S.568 Ligands: UDP.5, MG.6, PLC.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.303, A:Y.303, A:T.342, A:D.344, A:K.227, A:E.343, A:D.344 Halogen bonds: A:T.342

2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)

C2E.3: 16 residues within 4Å: Chain A: R.580, R.581, A.582, R.585, D.610, A.611, S.612, S.614, G.615, V.616, R.617, R.659, G.671, V.672, I.673 Ligands: C2E.4 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.580, A:R.581, A:A.582, A:R.585, A:S.612, A:S.612, A:S.614, A:S.614, A:R.617, A:R.617 Salt bridges: A:R.585, A:D.610, A:R.659 pi-Cation interactions: A:R.580, A:R.585 C2E.4: 8 residues within 4Å: Chain A: Q.579, R.580, R.581, R.585, R.617, R.659, S.660 Ligands: C2E.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Q.579, A:Q.579, A:R.580, A:R.580, A:R.581, A:R.585, A:R.585, A:R.617, A:R.617, A:S.660 Salt bridges: A:R.581, A:R.617 pi-Cation interactions: A:R.581

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.5: 19 residues within 4Å: Chain A: P.148, S.149, Y.150, E.152, D.181, A.226, K.227, N.230, D.247, A.248, Q.380, R.383, W.384, F.504, V.506, T.507, K.509 Ligands: BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-SHG.2, MG.6 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.504, A:V.506 Hydrogen bonds: A:Y.150, A:E.152, A:E.152, A:D.181, A:D.181, A:N.230, A:A.248, A:Q.380, A:T.507, A:T.507, A:T.507, A:T.507 Salt bridges: A:R.383, A:R.383, A:K.509, A:K.509

2 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 4 residues within 4Å: Chain A: H.250, Q.380 Ligands: BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-SHG.2, UDP.5 No protein-ligand interaction detected (PLIP) MG.9: 6 residues within 4Å: Chain B: G.231, L.234, P.235, E.237, A.487, A.488 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:G.231, B:L.234, B:E.237, B:A.487

3 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)

PLC.7: 9 residues within 4Å: Chain A: L.435, F.436, F.437, G.438, S.534, A.538, R.542, D.549 Ligands: BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-SHG.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.436, A:F.437, A:A.538 Hydrogen bonds: A:F.437 Salt bridges: A:R.542, A:R.542, A:D.549 pi-Cation interactions: A:F.546 PLC.11: 3 residues within 4Å: Chain B: Q.575, V.578 Ligands: UND.10 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Q.575 PLC.12: 5 residues within 4Å: Chain A: S.49 Chain B: P.695, L.698, G.699, L.702 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.695, B:L.698, B:L.702

1 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.8: 5 residues within 4Å: Chain A: A.55, K.58, G.709, L.710, L.711 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.55 Hydrogen bonds: A:L.710, A:L.711 Salt bridges: A:K.58

1 x UND: UNDECANE(Non-covalent)

UND.10: 5 residues within 4Å: Chain A: L.450 Chain B: W.570, S.571, Q.575 Ligands: PLC.11 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.570, A:L.450

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morgan, J.L. et al., Observing cellulose biosynthesis and membrane translocation in crystallo. Nature (2016)

Release Date

2016-03-09

Peptides

Putative cellulose synthase: A
Putative cellulose synthase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Putative cellulose synthase

Putative cellulose synthase

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