SMTL ID : 5ek6.1 (1 other biounit)

Thermostable aldehyde dehydrogenase from Pyrobaculum sp. 1860 complexed with NADP and isobutyraldehyde

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 32 residues within 4Å: Chain A: I.151, T.152, P.153, W.154, N.155, I.160, K.178, P.179, A.180, S.181, G.209, P.210, G.211, P.212, G.215, E.216, F.229, T.230, G.231, E.232, T.235, I.239, E.253, L.254, G.255, G.256, C.287, E.382, F.384, L.410, F.449 Ligands: 5OZ.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.160, A:T.230 Hydrogen bonds: A:T.152, A:W.154, A:S.181, A:G.211, A:E.232, A:E.232, A:E.253, A:L.254, A:G.256, A:E.382 Water bridges: A:E.238, A:E.238 Salt bridges: A:K.178 NAP.3: 32 residues within 4Å: Chain B: I.151, T.152, P.153, W.154, N.155, I.160, K.178, P.179, A.180, S.181, G.209, P.210, G.211, P.212, G.215, E.216, F.229, T.230, G.231, E.232, T.235, I.239, E.253, L.254, G.255, G.256, C.287, E.382, F.384, L.410, F.449 Ligands: 5OZ.4 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:I.160, B:T.230 Hydrogen bonds: B:T.152, B:T.152, B:W.154, B:K.178, B:S.181, B:G.211, B:E.232, B:T.235, B:L.254, B:G.256, B:E.382 Salt bridges: B:K.178 NAP.5: 31 residues within 4Å: Chain C: I.151, T.152, P.153, W.154, N.155, I.160, K.178, P.179, A.180, S.181, G.209, P.210, G.211, P.212, G.215, E.216, F.229, T.230, G.231, E.232, T.235, E.238, I.239, E.253, L.254, G.255, C.287, E.382, F.384, F.449 Ligands: 5OZ.6 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:I.160, C:T.230 Hydrogen bonds: C:T.152, C:T.152, C:W.154, C:S.181, C:G.211, C:E.232, C:E.232, C:E.238, C:E.253, C:L.254, C:E.382 Salt bridges: C:K.178 NAP.7: 30 residues within 4Å: Chain D: I.151, T.152, P.153, W.154, N.155, I.160, K.178, P.179, A.180, S.181, G.209, P.210, G.211, P.212, G.215, E.216, F.229, T.230, G.231, E.232, T.235, I.239, E.253, L.254, G.255, C.287, E.382, F.384, F.449 Ligands: 5OZ.8 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:I.160, D:T.230 Hydrogen bonds: D:T.152, D:W.154, D:K.178, D:S.181, D:G.211, D:E.232, D:T.235, D:E.253, D:L.254, D:E.382 Water bridges: D:S.233 Salt bridges: D:K.178

4 x 5OZ: 2-methylpropanal(Non-covalent)

5OZ.2: 8 residues within 4Å: Chain A: I.160, K.163, T.230, E.253, E.443, F.449, E.460 Ligands: NAP.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.163, A:F.449, A:F.449, A:E.460 Hydrogen bonds: A:T.230 5OZ.4: 8 residues within 4Å: Chain B: I.160, K.163, T.230, E.253, E.443, F.449, E.460 Ligands: NAP.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:K.163, B:F.449, B:F.449, B:E.460 Hydrogen bonds: B:T.230, B:T.230 5OZ.6: 8 residues within 4Å: Chain C: I.160, K.163, T.230, E.253, E.443, F.449, E.460 Ligands: NAP.5 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:K.163, C:F.449, C:F.449 Hydrogen bonds: C:T.230, C:E.460 5OZ.8: 8 residues within 4Å: Chain D: I.160, K.163, T.230, E.253, E.443, F.449, E.460 Ligands: NAP.7 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:I.160, D:K.163, D:F.449, D:F.449 Hydrogen bonds: D:T.230, D:T.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bezsudnova, E.Y. et al., NADP-Dependent Aldehyde Dehydrogenase from ArchaeonPyrobaculum sp.1860: Structural and Functional Features. Archaea (2016)

Release Date

2016-11-16

Peptides

Aldehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Aldehyde dehydrogenase

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