SMTL ID : 5eoy.1

Pseudomonas aeruginosa SeMet-PilM bound to ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: S.21, T.23, S.24, K.26, G.204, A.205, G.228, K.250, G.298, G.299, T.300, S.302, I.303, A.344 Ligands: MG.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.21, A:S.21, A:A.205, A:G.299 Water bridges: A:K.26, A:K.26 Salt bridges: A:K.26, A:K.26 ADP.4: 17 residues within 4Å: Chain B: S.21, S.22, T.23, K.26, G.204, A.205, G.228, T.232, K.250, K.251, G.298, G.299, T.300, S.302, I.303, A.344 Ligands: MG.5 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:S.21, B:S.22, B:T.23, B:A.205, B:T.232, B:T.232, B:K.251, B:G.299, B:T.300 Water bridges: B:K.26, B:T.206 Salt bridges: B:K.26, B:K.26

3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 1 residues within 4Å: Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain A: D.115, I.118 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.115, A:I.118, H2O.1, H2O.2 MG.5: 1 residues within 4Å: Ligands: ADP.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCallum, M. et al., PilN Binding Modulates the Structure and Binding Partners of the Pseudomonas aeruginosa Type IVa Pilus Protein PilM. J.Biol.Chem. (2016)

Release Date

2016-04-27

Peptides

Type 4 fimbrial biogenesis protein PilM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Type 4 fimbrial biogenesis protein PilM

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