SMTL ID : 5ere.1

Extracellular ligand binding receptor from Desulfohalobium retbaense DSM5692

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x COI: 2-OXO-4-METHYLPENTANOIC ACID(Non-covalent)

COI.1: 11 residues within 4Å: Chain A: F.14, S.71, S.72, W.73, G.93, S.94, A.95, L.138, R.210, P.211, F.255 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.14, A:W.73, A:F.255 Hydrogen bonds: A:S.72, A:A.95, A:R.210, A:R.210 Salt bridges: A:R.210

1 x CYT: 6-AMINOPYRIMIDIN-2(1H)-ONE(Non-covalent)

CYT.2: 11 residues within 4Å: Chain A: N.380, V.382, I.406, Q.409, M.429, V.430, E.431, D.437, E.439, S.454, L.456 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.382 Hydrogen bonds: A:Q.409, A:Q.409, A:V.430, A:E.431

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 7 residues within 4Å: Chain A: P.459, D.460, F.461, F.462, G.463, I.487, Y.488 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.462, A:G.463

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 3 residues within 4Å: Chain A: E.282, A.285, N.287 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.282, A:E.282, A:A.285

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: Q.213, R.214, A.215, E.251, G.253 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.213, A:R.214, A:A.215 Water bridges: A:E.251

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 8 residues within 4Å: Chain A: A.95, A.96, L.97, R.107, G.111, V.112, Q.113, M.145 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.97, A:R.107, A:R.107, A:Q.113 EDO.7: 4 residues within 4Å: Chain A: K.312, A.321, E.322, F.323 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.322, A:F.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joachimiak, A., A novel extracellular ligand receptor. To Be Published

Release Date

2016-08-10

Peptides

Extracellular ligand-binding receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Extracellular ligand-binding receptor