- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x RET: RETINAL(Covalent)
- 1 x 22B: BACTERIORUBERIN(Non-covalent)
22B.2: 15 residues within 4Å:- Chain A: F.155, A.181, I.182, A.185, V.189, I.193, E.197
- Chain B: G.46, I.49, V.53, T.56, V.69, I.72, V.76, I.79
15 PLIP interactions:9 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:I.49, B:I.49, B:V.53, B:V.69, B:I.72, B:V.76, B:I.79, B:I.79, A:F.155, A:F.155, A:A.181, A:I.182, A:V.189, A:I.193
- Water bridges: B:K.65
- 6 x L3P: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE(Non-covalent)
L3P.3: 8 residues within 4Å:- Chain A: S.92, V.93, L.94, W.121, L.164, L.168
- Ligands: L3P.4, L3P.10
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.121, A:W.121, A:W.121, A:L.164, A:L.168
L3P.4: 11 residues within 4Å:- Chain A: V.77, A.80, L.89, W.121, L.125, L.129
- Chain C: T.154, I.157, V.161, A.165
- Ligands: L3P.3
10 PLIP interactions:5 interactions with chain C, 5 interactions with chain A- Hydrophobic interactions: C:T.154, C:I.157, C:I.157, C:V.161, C:A.165, A:V.77, A:L.89, A:L.89, A:W.121, A:L.129
L3P.9: 6 residues within 4Å:- Chain B: S.92, L.94, W.121, L.168
- Ligands: L3P.10, L3P.14
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.94, B:W.121, B:L.168
L3P.10: 14 residues within 4Å:- Chain A: A.158, V.161, T.162, A.165, L.168, W.179
- Chain B: V.77, A.80, S.81, G.84, L.89, L.129
- Ligands: L3P.3, L3P.9
10 PLIP interactions:3 interactions with chain B, 7 interactions with chain A- Hydrophobic interactions: B:L.89, B:L.89, B:L.129, A:A.158, A:V.161, A:V.161, A:T.162, A:A.165, A:L.168, A:W.179
L3P.14: 17 residues within 4Å:- Chain B: T.154, I.157, A.158, V.161, A.165, W.179
- Chain C: L.73, V.77, A.80, S.81, G.84, L.89, T.90, W.121, L.129, M.133
- Ligands: L3P.9
13 PLIP interactions:4 interactions with chain B, 9 interactions with chain C- Hydrophobic interactions: B:I.157, B:A.158, B:A.165, B:W.179, C:L.73, C:V.77, C:A.80, C:L.89, C:L.89, C:L.89, C:T.90, C:W.121, C:L.129
L3P.15: 5 residues within 4Å:- Chain C: S.92, L.94, W.121, L.164, L.168
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:W.121, C:W.121, C:L.164, C:L.168
- 6 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)
BNG.5: 7 residues within 4Å:- Chain A: A.98, G.99, H.173, L.174, W.177
- Ligands: BNG.6, BNG.11
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:A.98, A:H.173
- Water bridges: A:H.173
- Salt bridges: A:H.173
BNG.6: 5 residues within 4Å:- Chain A: G.99, F.101, H.173, W.177
- Ligands: BNG.5
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.101
- Hydrogen bonds: A:G.99
- Salt bridges: A:H.173
BNG.7: 5 residues within 4Å:- Chain A: F.25, E.26, I.42
- Chain C: M.175, F.178
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:I.42, C:F.178
- Hydrogen bonds: A:E.26, A:E.26
BNG.11: 7 residues within 4Å:- Chain A: L.174, M.175, F.178
- Chain B: F.25, E.26, Y.39
- Ligands: BNG.5
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:F.178, A:F.178, B:Y.39
- Hydrogen bonds: B:E.26, B:E.26
- Water bridges: B:R.22
BNG.12: 11 residues within 4Å:- Chain B: T.151, F.155, I.182, A.185, V.189, Y.192, I.193, E.197
- Chain C: I.49, V.53, K.65
10 PLIP interactions:2 interactions with chain C, 8 interactions with chain B- Hydrophobic interactions: C:I.49, B:F.155, B:F.155, B:I.182, B:V.189
- Hydrogen bonds: C:K.65, B:E.197
- Water bridges: B:T.151, B:E.197, B:E.197
BNG.16: 12 residues within 4Å:- Chain A: I.49, V.53, K.65, V.76
- Chain C: T.151, F.155, I.182, A.185, V.189, Y.192, I.193, E.197
11 PLIP interactions:5 interactions with chain A, 6 interactions with chain C- Hydrophobic interactions: A:I.49, A:V.76, A:V.76, C:F.155, C:F.155, C:I.182, C:A.185, C:V.189
- Hydrogen bonds: A:K.65, A:K.65, C:E.197
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, S.K. et al., Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States. Biochemistry (2016)
- Release Date
- 2016-07-27
- Peptides
- Halorhodopsin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x RET: RETINAL(Covalent)
- 1 x 22B: BACTERIORUBERIN(Non-covalent)
- 6 x L3P: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE(Non-covalent)
- 6 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, S.K. et al., Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States. Biochemistry (2016)
- Release Date
- 2016-07-27
- Peptides
- Halorhodopsin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
D - Membrane
-
We predict this structure to be a membrane protein.