SMTL ID : 5euf.1

The crystal structure of a protease from Helicobacter pylori

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: K.262, H.263, D.380, Q.390 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.380 GOL.4: 4 residues within 4Å: Chain B: K.262, H.263, K.264, D.380 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.263

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.53, H.57, E.133 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.53, A:E.133 ZN.3: 1 residues within 4Å: Chain A: Q.304 No protein-ligand interaction detected (PLIP) ZN.5: 3 residues within 4Å: Chain B: H.53, H.57, E.133 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.53, B:E.133 ZN.6: 1 residues within 4Å: Chain B: Q.304 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a protease from Helicobacter pylori. To Be Published

Release Date

2015-12-02

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease