SMTL ID : 5ew6.1

Structure of ligand binding region of uPARAP at pH 7.4 without calcium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-NAG.1: 1 residues within 4Å: Chain A: N.469 No protein-ligand interaction detected (PLIP)

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: E.442, N.444, N.445, D.465 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.444, A:N.445, A:D.465 NA.3: 4 residues within 4Å: Chain A: Q.298, D.300, E.305, N.320 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.298, A:Q.298

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: N.41, S.43, L.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.41, A:S.43

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 3 residues within 4Å: Chain A: R.178, W.184, Y.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.178, A:W.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, C. et al., Crystal structures of the ligand-binding region of uPARAP: effect of calcium ion binding. Biochem.J. (2016)

Release Date

2016-08-10

Peptides

C-type mannose receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C-type mannose receptor 2

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