SMTL ID : 5ewo.1

Crystal structure of the human astrovirus 1 capsid protein spike domain at 0.95-A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.95 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: A.19, N.20, N.21 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.20, A:N.20, A:N.21 Water bridges: A:N.21, A:N.21 SO4.2: 3 residues within 4Å: Chain A: P.33, S.34, Y.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.34, A:Y.125 SO4.3: 4 residues within 4Å: Chain A: P.14, M.15, S.16, S.154 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.16, A:S.16 Water bridges: A:P.14, A:S.154 SO4.4: 4 residues within 4Å: Chain A: K.185, T.186, N.187, T.188 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.186, A:T.186, A:N.187, A:T.188, A:T.188 SO4.5: 3 residues within 4Å: Chain B: A.19, N.20, N.21 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.20, B:N.20, B:N.21 Water bridges: B:N.21, B:N.21 SO4.6: 3 residues within 4Å: Chain B: P.33, S.34, Y.125 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.34, B:Y.125 SO4.7: 4 residues within 4Å: Chain B: P.14, M.15, S.16, S.154 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.16, B:S.16 Water bridges: B:P.14, B:S.154 SO4.8: 4 residues within 4Å: Chain B: K.185, T.186, N.187, T.188 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.186, B:T.186, B:N.187, B:T.188, B:T.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

York, R.L. et al., Structural, Mechanistic, and Antigenic Characterization of the Human Astrovirus Capsid. J.Virol. (2015)

Release Date

2015-12-23

Peptides

Structural protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Structural protein