SMTL ID : 5ex9.1

Structure of P450 StaF from glycopeptide antibiotic A47934 biosynthesis; glycerol cryo

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: L.118, T.119, H.126, R.130, F.137, F.261, A.266, Q.269, V.270, L.273, T.311, D.312, T.315, H.316, R.318, L.341, A.367, F.368, G.369, I.372, H.373, C.375, L.376, G.377, M.380, A.381 18 PLIP interactions: 17 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.137, A:F.261, A:A.266, A:V.270, A:L.273, A:D.312, A:L.341, A:F.368, A:L.376 Hydrogen bonds: A:H.316, A:H.373 Salt bridges: A:H.126, A:R.130, A:H.316, A:R.318, A:H.373 Metal complexes: A:C.375, H2O.1

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: D.192, Y.222, Q.225, H.226, Q.229 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.225, A:H.226, A:Q.229 Water bridges: A:Q.225 GOL.3: 5 residues within 4Å: Chain A: K.314, T.315, H.316, P.317, T.338 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.314, A:T.315 Water bridges: A:D.312, A:D.312, A:D.312, A:D.312 GOL.4: 4 residues within 4Å: Chain A: D.192, D.195, I.199, Y.222 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.192, A:D.195 Water bridges: A:K.218 GOL.5: 4 residues within 4Å: Chain A: G.369, H.370, G.371, H.374 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.369, A:G.371, A:G.371, A:H.374 GOL.6: 4 residues within 4Å: Chain A: A.228, R.231, R.232, D.252 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.232, A:R.232, A:D.248 Water bridges: A:R.232, A:D.252 GOL.7: 3 residues within 4Å: Chain A: R.130, V.134, H.374 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.130 GOL.8: 3 residues within 4Å: Chain A: T.409, E.418, A.419 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.418, A:E.418 GOL.9: 2 residues within 4Å: Chain A: R.91, H.370 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.91, A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ulrich, V. et al., Biochemical and structural characterisation of the second oxidative crosslinking step during the biosynthesis of the glycopeptide antibiotic A47934. Beilstein J Org Chem (2016)

Release Date

2017-01-11

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450

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