- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.31 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 12 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)
C2E.2: 12 residues within 4Å:- Chain A: F.9, R.10, E.196, S.199, R.200, H.203
- Chain C: E.202, E.204, K.205, R.206, G.207
- Ligands: C2E.3
10 PLIP interactions:8 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:R.10, A:R.10, A:R.10, A:S.199, A:R.200, C:R.206, C:G.207
- Salt bridges: A:E.196, A:R.200
- pi-Cation interactions: A:R.10
C2E.3: 13 residues within 4Å:- Chain A: L.8, F.9, R.10, V.48, R.51, N.52, Y.55, H.56, R.200
- Chain C: K.205, R.206, I.240
- Ligands: C2E.2
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:S.11, A:R.51, A:N.52, A:Y.55, C:R.206
C2E.5: 12 residues within 4Å:- Chain A: E.202, E.204, K.205, R.206, G.207
- Chain B: F.9, R.10, E.196, S.199, R.200, H.203
- Ligands: C2E.6
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.10, B:R.10, B:R.10, B:S.199, B:R.200, A:R.206, A:G.207
- Salt bridges: B:E.196, B:R.200
- pi-Cation interactions: B:R.10
C2E.6: 13 residues within 4Å:- Chain A: K.205, R.206, I.240
- Chain B: L.8, F.9, R.10, V.48, R.51, N.52, Y.55, H.56, R.200
- Ligands: C2E.5
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.11, B:R.51, B:N.52, B:Y.55, A:R.206
C2E.8: 12 residues within 4Å:- Chain B: E.202, E.204, K.205, R.206, G.207
- Chain C: F.9, R.10, E.196, S.199, R.200, H.203
- Ligands: C2E.9
10 PLIP interactions:2 interactions with chain B, 8 interactions with chain C- Hydrogen bonds: B:R.206, B:G.207, C:R.10, C:R.10, C:R.10, C:S.199, C:R.200
- Salt bridges: C:E.196, C:R.200
- pi-Cation interactions: C:R.10
C2E.9: 13 residues within 4Å:- Chain B: K.205, R.206, I.240
- Chain C: L.8, F.9, R.10, V.48, R.51, N.52, Y.55, H.56, R.200
- Ligands: C2E.8
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain C- Hydrogen bonds: B:R.206, C:S.11, C:R.51, C:N.52, C:Y.55
C2E.11: 12 residues within 4Å:- Chain D: F.9, R.10, E.196, S.199, R.200, H.203
- Chain F: E.202, E.204, K.205, R.206, G.207
- Ligands: C2E.12
10 PLIP interactions:8 interactions with chain D, 2 interactions with chain F- Hydrogen bonds: D:R.10, D:R.10, D:R.10, D:S.199, D:R.200, F:R.206, F:G.207
- Salt bridges: D:E.196, D:R.200
- pi-Cation interactions: D:R.10
C2E.12: 13 residues within 4Å:- Chain D: L.8, F.9, R.10, V.48, R.51, N.52, Y.55, H.56, R.200
- Chain F: K.205, R.206, I.240
- Ligands: C2E.11
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:S.11, D:R.51, D:N.52, F:R.206
C2E.14: 12 residues within 4Å:- Chain D: E.202, E.204, K.205, R.206, G.207
- Chain E: F.9, R.10, E.196, S.199, R.200, H.203
- Ligands: C2E.15
10 PLIP interactions:8 interactions with chain E, 2 interactions with chain D- Hydrogen bonds: E:R.10, E:R.10, E:R.10, E:S.199, E:R.200, D:R.206, D:G.207
- Salt bridges: E:E.196, E:R.200
- pi-Cation interactions: E:R.10
C2E.15: 13 residues within 4Å:- Chain D: K.205, R.206, I.240
- Chain E: L.8, F.9, R.10, V.48, R.51, N.52, Y.55, H.56, R.200
- Ligands: C2E.14
4 PLIP interactions:1 interactions with chain D, 3 interactions with chain E- Hydrogen bonds: D:R.206, E:S.11, E:R.51, E:N.52
C2E.17: 12 residues within 4Å:- Chain E: E.202, E.204, K.205, R.206, G.207
- Chain F: F.9, R.10, E.196, S.199, R.200, H.203
- Ligands: C2E.18
10 PLIP interactions:2 interactions with chain E, 8 interactions with chain F- Hydrogen bonds: E:R.206, E:G.207, F:R.10, F:R.10, F:R.10, F:S.199, F:R.200
- Salt bridges: F:E.196, F:R.200
- pi-Cation interactions: F:R.10
C2E.18: 13 residues within 4Å:- Chain E: K.205, R.206, I.240
- Chain F: L.8, F.9, R.10, V.48, R.51, N.52, Y.55, H.56, R.200
- Ligands: C2E.17
4 PLIP interactions:3 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:S.11, F:R.51, F:N.52, E:R.206
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Matsuyama, B.Y. et al., Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-02-10
- Peptides
- Transcriptional regulator FleQ: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.31 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 12 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Matsuyama, B.Y. et al., Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-02-10
- Peptides
- Transcriptional regulator FleQ: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A