SMTL ID : 5f1i.4 (7 other biounits)

MHC with 9-mer peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- LEU- PHE- SER- GLY- GLU- LEU- THR- LYS: 9-mer peptide(Non-covalent)

LYS-LEU-PHE-SER-GLY-GLU-LEU-THR-LYS.1: 24 residues within 4Å: Chain A: Y.7, Y.9, E.63, K.66, V.67, V.73, Y.74, D.77, Y.84, I.95, Y.99, R.114, D.116, Y.123, T.143, K.146, W.147, A.150, V.152, Q.156, W.157, Y.160, W.168, Y.172 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.7, A:Y.9, A:V.67, A:Y.99, A:Y.123, A:T.143, A:A.150, A:W.157, A:W.157, A:Y.160, A:Y.160, A:W.168, A:W.168 Hydrogen bonds: A:Y.7, A:Y.9, A:E.63, A:K.66, A:Y.74, A:D.77, A:D.77, A:Y.99, A:Y.99, A:K.146, A:Y.160, A:W.168, A:Y.172 Salt bridges: A:R.114 pi-Stacking: A:W.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, J. et al., Diversified Anchoring Features the Peptide Presentation of DLA-88*50801: First Structural Insight into Domestic Dog MHC Class I. J Immunol. (2016)

Release Date

2016-11-30

Peptides

MHC class I DLA-88: A
Beta2M: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

MHC class I DLA-88

Beta2M

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