SMTL ID : 5f23.1

Crystal structure of NH(3)-dependent NAD(+) synthetase Pseudomonas aeruginosa in complex with NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 16 residues within 4Å: Chain A: F.147, N.151, R.155, G.184, F.185, F.186, T.187, K.188, H.275, K.276, K.281 Chain B: S.50, Y.162, G.170, L.171, D.195 20 PLIP interactions: 17 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.147, A:F.147 Hydrogen bonds: A:N.151, A:K.188, A:K.188, B:G.170 Water bridges: A:R.155, A:R.155, A:G.184, A:F.185, A:H.242, A:K.281, A:K.281, B:C.46, B:S.50 Salt bridges: A:R.155, A:K.276, A:K.276 pi-Stacking: A:H.275, A:H.275 NAD.3: 16 residues within 4Å: Chain A: S.50, Y.162, G.170, L.171, D.195 Chain B: F.147, N.151, R.155, G.184, F.185, F.186, T.187, K.188, H.275, K.276, K.281 20 PLIP interactions: 17 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.147, B:F.147 Hydrogen bonds: B:N.151, B:K.188, B:K.188, A:G.170 Water bridges: B:R.155, B:R.155, B:G.184, B:F.185, B:H.242, B:K.281, B:K.281, A:C.46, A:S.50 Salt bridges: B:R.155, B:K.276, B:K.276 pi-Stacking: B:H.275, B:H.275

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 7 residues within 4Å: Chain A: G.62, V.63, D.64, E.180, F.185, D.191, K.204 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.63, A:D.64 Water bridges: A:S.60, A:S.60, A:S.60 Salt bridges: A:D.64, A:E.180, A:K.204 MES.4: 7 residues within 4Å: Chain B: G.62, V.63, D.64, E.180, F.185, D.191, K.204 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:V.63, B:D.64 Water bridges: B:S.60, B:S.60, B:S.60, B:D.64 Salt bridges: B:D.64, B:E.180, B:K.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of NH(3)-dependent NAD(+) synthetase Pseudomonas aeruginosa in complex with NAD. to be published

Release Date

2015-12-23

Peptides

NH(3)-dependent NAD(+) synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NH(3)-dependent NAD(+) synthetase

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