SMTL ID : 5f2u.2 (1 other biounit)

Structure of Fully modified farnesylated INPP5E Peptide in complex with PDE6D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x SER- SER- THR- ILE- CMT: Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, s-farnesyl-l-cysteine methyl ester(Non-covalent)

SER-SER-THR-ILE-CMT.1: 17 residues within 4Å: Chain A: I.52, L.53, C.55, V.58, V.79, E.87, W.89, I.108, E.109, A.110, A.111, Q.115, M.116, M.117, I.128, Y.148 Ligands: FAR.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.58, A:V.79, A:W.89, A:W.89, A:A.110, A:A.111, A:I.128 Hydrogen bonds: A:E.87, A:E.109, A:A.111, A:M.117

1 x FAR: FARNESYL(Non-covalent)

FAR.2: 12 residues within 4Å: Chain A: M.19, W.31, L.37, I.52, Q.77, W.89, T.130, S.142, L.146, Y.148 Ligands: SER-SER-THR-ILE-CMT.1, SER-SER-THR-ILE-CMT.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.31, A:L.37, A:I.52, A:W.89, A:W.89, A:L.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fansa, E.K. et al., PDE6delta-mediated sorting of INPP5E into the cilium is determined by cargo-carrier affinity. Nat Commun (2016)

Release Date

2016-04-13

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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