SMTL ID : 5f3z.1

Dengue serotype 3 RNA-dependent RNA polymerase bound to PC-79-SH52

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.447, H.449, C.463, C.582 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.447, A:H.449, A:C.463, A:C.582 ZN.2: 4 residues within 4Å: Chain A: E.172, H.176, C.181, C.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.172, A:H.176, A:C.181, A:C.184

1 x 5V5: 2-(4-methoxy-3-thiophen-2-yl-phenyl)ethanoic acid(Non-covalent)

5V5.3: 12 residues within 4Å: Chain A: L.246, C.444, H.446, R.464, R.472, M.496, Y.501, T.529, S.531, H.533, A.534, W.538 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.246, A:T.529, A:W.538 Hydrogen bonds: A:S.531 Water bridges: A:R.472, A:W.530, A:S.531, A:S.531 pi-Cation interactions: A:H.446

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Noble, C.G. et al., A Conserved Pocket in the Dengue Virus Polymerase Identified through Fragment-based Screening. J.Biol.Chem. (2016)

Release Date

2016-02-24

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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