SMTL ID : 5f4z.1 (2 other biounits)

The crystal structure of an epoxide hydrolase from Streptomyces carzinostaticus subsp. neocarzinostaticus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: H.82, R.84, L.164, G.165, Y.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.165 GOL.2: 5 residues within 4Å: Chain A: P.92, G.165, Y.166, S.167, R.168 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.165, A:S.167, A:R.168, A:R.168 Water bridges: A:A.90 GOL.3: 5 residues within 4Å: Chain A: L.293, T.294, A.295 Chain B: R.24 Ligands: PEG.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.24 GOL.4: 3 residues within 4Å: Chain A: A.58, A.59, R.62 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.62 Water bridges: A:A.58, A:A.59, A:R.62 GOL.5: 1 residues within 4Å: Chain A: H.191 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.191

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 4 residues within 4Å: Chain A: D.21, G.48, R.51, D.52 No protein-ligand interaction detected (PLIP) ACT.9: 4 residues within 4Å: Chain B: W.34, M.266, E.267 Ligands: TRS.11 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 4 residues within 4Å: Chain A: I.8, P.9, D.12 Ligands: GOL.3 No protein-ligand interaction detected (PLIP)

2 x 5V4: (1~{R},2~{R})-2,3-dihydro-1~{H}-indene-1,2-diol(Non-covalent)

5V4.8: 11 residues within 4Å: Chain A: D.175, W.179, F.199, I.201, F.228, Y.235, M.236, W.268, P.312, S.337, H.363 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.179, A:F.199, A:F.199, A:I.201, A:F.228, A:F.228, A:F.228, A:P.312 Hydrogen bonds: A:S.337, A:H.363, A:H.363 5V4.12: 11 residues within 4Å: Chain B: D.175, W.179, F.199, I.201, F.228, Y.235, M.236, W.268, P.312, S.337, H.363 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.179, B:F.199, B:I.201, B:F.228, B:F.228, B:F.228, B:P.312 Hydrogen bonds: B:Y.235, B:S.337, B:H.363 pi-Stacking: B:F.199

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.10: 7 residues within 4Å: Chain A: R.24 Chain B: I.8, P.9, D.12, L.293, T.294, A.295 No protein-ligand interaction detected (PLIP)

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.11: 7 residues within 4Å: Chain B: M.266, E.267, W.268, G.269, A.335, D.336 Ligands: ACT.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.267, B:A.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of an epoxide hydrolase from Streptomyces carzinostaticus subsp. neocarzinostaticus. To Be Published

Release Date

2016-02-17

Peptides

Epoxide hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Epoxide hydrolase

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