SMTL ID : 5f53.1

Nano-ring of cadmium ions coordinated by nvPizza2-S16S58

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x CD: CADMIUM ION(Non-covalent)

CD.1: 3 residues within 4Å: Chain A: H.27 Ligands: CL.2, CL.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.27, H2O.2 CD.4: 3 residues within 4Å: Chain B: H.27 Ligands: CL.5, CL.6 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.27, H2O.4 CD.7: 3 residues within 4Å: Chain C: H.27 Ligands: CL.8, CL.9 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.27, H2O.6

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: H.27, H.69 Ligands: CD.1 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: H.27 Chain B: H.69 Ligands: CD.1 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: H.27, H.69 Ligands: CD.4 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: H.27 Chain C: H.69 Ligands: CD.4 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain C: H.27, H.69 Ligands: CD.7 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: H.69 Chain C: H.27 Ligands: CD.7 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Voet, A.R.D. et al., A cadmium chloride ring created by a designed symmetrical protein. To Be Published

Release Date

2016-12-14

Peptides

NVPIZZA2-S16S58: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

NVPIZZA2-S16S58

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