SMTL ID : 5f54.1

Structure of RecJ complexed with dTMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.79, D.81, D.135 Ligands: MN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.79, A:D.81, A:D.81, A:D.135, H2O.1 MN.2: 6 residues within 4Å: Chain A: D.83, D.135, H.159, H.160, D.223 Ligands: MN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.83, A:D.135, A:H.159, A:D.223, H2O.1

1 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)

TMP.3: 14 residues within 4Å: Chain A: R.109, Y.114, H.160, R.280, G.348, S.371, R.373, F.394, G.395, G.396, H.397, A.401, G.402, F.403 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.348, A:S.371 Salt bridges: A:R.109, A:R.280, A:R.373 pi-Stacking: A:Y.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, K. et al., Structural basis for DNA 5 -end resection by RecJ. Elife (2016)

Release Date

2016-06-15

Peptides

Single-stranded-DNA-specific exonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Single-stranded-DNA-specific exonuclease

Related Entries With Identical Sequence