SMTL ID : 5f55.1

Structure of RecJ complexed with DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.438, V.439, W.663 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.439, A:D.635 SO4.2: 6 residues within 4Å: Chain A: R.109, G.348, S.371, R.373 Chain B: G.1, A.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.348, A:S.371 Salt bridges: A:R.109, A:R.373 SO4.3: 3 residues within 4Å: Chain A: T.263, R.265, R.462 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.263 Salt bridges: A:R.265, A:R.462 SO4.4: 4 residues within 4Å: Chain A: G.627, P.628, K.629, T.630 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.627, A:K.629, A:T.630, A:T.630 SO4.5: 3 residues within 4Å: Chain A: L.8, R.432, G.540 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.540 Salt bridges: A:R.432 SO4.6: 2 residues within 4Å: Chain A: S.606, R.609 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.609 SO4.7: 3 residues within 4Å: Chain A: T.472, R.487, G.490 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.472 Salt bridges: A:R.487

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.8: 5 residues within 4Å: Chain A: D.79, D.81, D.135 Chain B: A.2 Ligands: MN.9 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.79, A:D.81, A:D.81, A:D.135 MN.9: 6 residues within 4Å: Chain A: D.83, D.135, H.159, D.223 Chain B: A.2 Ligands: MN.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.83, A:D.135, A:H.159, A:D.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, K. et al., Structural basis for DNA 5 -end resection by RecJ. Elife (2016)

Release Date

2016-06-15

Peptides

Single-stranded-DNA-specific exonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Single-stranded-DNA-specific exonuclease

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